Science · 2010 · 1.6K citations · 19 references
Life SciencesGeneticsMolecular BiologyCell ProliferationGene ExpressionSynthetic BiologyBacterial Gene RegulationGene Expression RegulationGenetic Circuit DesignMicrobial Synthetic BiologySynthetic Biology Circuit ModelingTranslational RegulationBacterial Growth KineticsBacterial Protein SynthesisCell Growth RegulationCell Proliferation KineticsConstraintsPhenomenological ModelsSynthetic Gene Circuit Design
In bacteria, the rate of cell proliferation and the level of gene expression are intimately intertwined. Elucidating these relations is important both for understanding the physiological functions of endogenous genetic circuits and for designing robust synthetic systems. We describe a phenomenological study that reveals intrinsic constraints governing the allocation of resources toward protein synthesis and other aspects of cell growth. A theory incorporating these constraints accurately predicts the reciprocal effects of cell proliferation and gene expression, accounting for translation‑inhibiting antibiotics and gratuitous protein expression, and such empirical relations may aid understanding and manipulation of complex biological systems before regulatory circuits are elucidated.
In bacteria, the rate of cell proliferation and the level of gene expression are intimately intertwined. Elucidating these relations is important both for understanding the physiological functions of endogenous genetic circuits and for designing robust synthetic systems. We describe a phenomenological study that reveals intrinsic constraints governing the allocation of resources toward protein synthesis and other aspects of cell growth. A theory incorporating these constraints can accurately predict how cell proliferation and gene expression affect one another, quantitatively accounting for the effect of translation-inhibiting antibiotics on gene expression and the effect of gratuitous protein expression on cell growth. The use of such empirical relations, analogous to phenomenological laws, may facilitate our understanding and manipulation of complex biological systems before underlying regulatory circuits are elucidated.
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THE GROWTH OF BACTERIAL CULTURES
Annual Review of Microbiology · 1949 · 3.7K citations
Life Sciences, Biology, Microbiology +12
Optimality and evolutionary tuning of the expression level of a protein
Growth Rate-Dependent Global Effects on Gene Expression in Bacteria
Stefan Klumpp, Zhongge Zhang, Terence Hwa · Cell · 2009 · 755 citations · Full text
Metabolic load and heterologous gene expression
Bernard R. Glick · Biotechnology Advances · 1995 · 677 citations