Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein

Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, +4

Molecular & Cellular Proteomics

Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements

Rainer Lutz

Nucleic Acids Research

Nascent transcript sequencing visualizes transcription at nucleotide resolution

L. Stirling Churchman, Jonathan S. Weissman

Nature

Long-read SequencingFunctional GenomicsGeneticsSequence AnalysisRna Sequencing +6

Emergent Properties of Reduced-Genome <i>Escherichia coli</i>

György Pósfai, Guy Plunkett, Tamás Fehér, +10

Science

Emergent PropertiesPrecise DeletionsEngineeringVirulence FactorGenetics +13

Identification of cross-linked peptides from complex samples

Bing Yang, Yanjie Wu, Ming Zhu, +16

Nature Methods

Natural SciencesPeptide EngineeringPeptide LibraryMolecular BiologyProtein Engineering +3

Cooperation Between Translating Ribosomes and RNA Polymerase in Transcription Elongation

Sergey Proshkin, A. Rachid Rahmouni, Evgeny Nudler

Science

Molecular BiologyGene TranscriptionProtein SynthesisTranscriptional RegulationRna Binding Proteins +16

Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand

Isabel Mellon, Philip C. Hanawalt

Nature

Genome InstabilityNatural SciencesGeneticsBacteriologyMolecular Biology +9

Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II

Ronny Drapkin, Joyce T. Reardon, Athar Ansari, +5

Nature

Genome InstabilityRna Polymerase IiDual RoleGeneticsNatural Sciences +5

The RNA–DNA Hybrid Maintains the Register of Transcription by Preventing Backtracking of RNA Polymerase

Evgeny Nudler, Arkady Mustaev, Alex Goldfarb, +1

Cell

Transcriptional RegulationNatural SciencesGeneticsRna SplicingRna Biology +9

A Structural Model of Transcription Elongation

Nataliya Korzheva, Arkady Mustaev, Arun Malhotra, +3

Science