Genome Announcements · 2013 · 25 citations · 11 references
AgriculturePlant BiologyPlant SciencesGenomicsPlant GenomicsPlant-microbe InteractionsBacterial Pathogenesis In PlantsBacterial Plant PathogensBiocontrol Of Plant DiseasesComparative Microbial GenomicsPathogen GenomicsSeed-borne Bacterial DiseasesAntagonistic InteractionsBacterial Endophytes In SeedsBiocontrol Of Root PathogensEndophyte GenomicsPlant - Bacterium InteractionsPlant-microbe SymbiosisRoot Rot DiseasesWhole-genome Sequence Analysis
The endophytic bacterium Pseudomonas poae RE*1-1-14 shows broad antagonistic activity and is applied to seeds as a biocontrol agent to suppress late root rot in the sugar beet. The completely sequenced 5.5-Mb genome reveals genes that putatively contribute to this antagonistic activity and the intimate plant-microbe interaction.
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The Pfam Protein Families Database
Alex Bateman · Nucleic Acids Research · 2002 · 14.2K citations · Full text
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 13.1K citations · Full text
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen, Peter F. Hallin, Einar Andreas Rødland et al. · Nucleic Acids Research · 2007 · 6.3K citations · Full text
The COG database: an updated version includes eukaryotes
Roman L. Tatusov, Natalie D. Fedorova, John D. Jackson et al. · BMC Bioinformatics · 2003 · 4.5K citations · Full text