Concepedia

Building high-quality assay libraries for targeted analysis of SWATH MS data

Olga T. Schubert, Ludovic Gillet, Ben C. Collins, Pedro Navarro, George Rosenberger, Witold Wolski, Henry Lam, Dario Amodei, Parag Mallick, Brendan MacLean,

Nature Protocols · 2015 · 333 citations · 49 references

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49

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Jürgen Cox, Matthias Mann · Nature Biotechnology · 2008 · 15.7K citations

, , +15

Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search

Andrew Keller, Alexey I. Nesvizhskii, Eugene Kolker et al. · Analytical Chemistry · 2002 · 5K citations

, , +17

A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry

Alexey I. Nesvizhskii, Andrew Keller, Eugene Kolker et al. · Analytical Chemistry · 2003 · 5K citations

, , +17

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman et al. · Bioinformatics · 2010 · 5K citations · Full text

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

Joshua E. Elias, Steven P. Gygi · Nature Methods · 2007 · 4.1K citations

, , +16