Concepedia

Variable K-mer Assembly

Variable k-Mer Assembly is a genome assembly method that employs variable-length k-mers to dynamically adapt the granularity of sequence overlap representation in de Bruijn graph construction, thereby improving the resolution of repetitive regions and variable coverage areas compared to fixed k-mer approaches.

7

Publications

186

Citations

30

Authors

17

Institutions

Publications per year

2017–2026

3

Parents

Publications

7

A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome

Joanna Moreton, Stephen Dunham, Richard D. Emes · Frontiers in Genetics · 2014 · 40 citations · Full text

, , +14

Informed <i>k</i>mer selection for <i>de novo</i> transcriptome assembly

Dilip A. Durai, Marcel H. Schulz · Bioinformatics · 2016 · 37 citations · Full text

, , +13

Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms

Berat Z. Haznedaroğlu, Darryl Reeves, Hamid Rismani‐Yazdi et al. · BMC Bioinformatics · 2012 · 34 citations · Full text

, , +17

Optimal choice of k-mer in composition vector method for genome sequence comparison

Subhram Das, Tamal Deb, Nilanjan Dey et al. · Genomics · 2017 · 27 citations

, , +15

Scalable Genome Assembly through Parallel de Bruijn Graph Construction for Multiple k-mers

Kanak Mahadik, Christopher Wright, Milind Kulkarni et al. · Scientific Reports · 2019 · 18 citations · Full text

, , +15

1–5 of 7

Authors

30

  1. JM
    Joanna Moreton

    University of Nottingham, United Kingdom

    1 publications · 40 citations

    1

    h-index

  2. MK
    Milind Kulkarni

    Purdue University West Lafayette, United States

    1 publications · 18 citations

    1

    h-index

  3. SB
    Saurabh Bagchi

    Purdue University West Lafayette, United States

    1 publications · 18 citations

    1

    h-index

  4. ND
    Nilanjan Dey

    Techno India University, India

    1 publications · 27 citations

    1

    h-index

  5. SC
    Somali Chaterji

    Purdue University West Lafayette, United States

    1 publications · 18 citations

    1

    h-index

1–5 of 30

Institutions

17

  1. Purdue University West Lafayette

    West Lafayette, United States

    1 h-index

    4 publications

    72 citations

  2. Techno India University

    Kolkata, India

    1 h-index

    1 publications

    27 citations

  3. Wayne State University

    Detroit, United States

    1 h-index

    1 publications

    13 citations

  4. Jadavpur University

    Kolkata, India

    1 h-index

    1 publications

    27 citations

  5. Yale University

    New Haven, United States

    1 h-index

    4 publications

    136 citations

  6. Massachusetts Institute of Technology

    Cambridge, United States

    1 h-index

    1 publications

    34 citations

  7. Hong Kong University of Science and Technology

    Hong Kong, Hong Kong

    1 h-index

    5 publications

    85 citations

  8. Colorado State University

    Fort Collins, United States

    1 h-index

    3 publications

    39 citations

1–8 of 17

Venues

  1. BMC Bioinformatics

    2 publications · 51 citations

    2

    h-index

  2. Genomics

    1 publications · 27 citations

    1

    h-index

  3. Bioinformatics

    1 publications · 37 citations

    1

    h-index

  4. BMC Genomics

    1 publications · 13 citations

    1

    h-index

  5. Scientific Reports

    1 publications · 18 citations

    1

    h-index

1–5