Trajectory Analysis Publications

Publications in Trajectory Analysis

Explore the most influential research papers and scholarly works that have shaped Trajectory Analysis. Use the concept filter below to focus on a specific sub-area of research.

Trajectory Analysis

1.8K

Publications

264.2K

Citations

Showing yearly statistics from 2000-2026.

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	Year	Citations
Comprehensive Integration of Single-Cell Data Tim Stuart, Andrew Butler, Paul Hoffman, Cell EngineeringBiomedical Data IntegrationData ScienceSingle Cell SequencingMedicine	2019	16K
Integrating single-cell transcriptomic data across different conditions, technologies, and species Andrew Butler, Paul Hoffman, Peter Smibert, Nature Biotechnology EngineeringGeneticsMultiomicsSingle-cell Transcriptomic DataTranscriptomics Technology	2018	14.1K
Fast, sensitive and accurate integration of single-cell data with Harmony Ilya Korsunsky, Nghia Millard, Jean Fan, Nature Methods BioinformaticsEngineeringData ScienceSingle Cell SequencingMedicine	2019	9.5K
Spatial reconstruction of single-cell gene expression data Rahul Satija, Jeffrey A. Farrell, David Gennert, Nature Biotechnology Functional GenomicsEngineeringSingle Cell SequencingMedicineSpatial Omics	2015	7.3K
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data Daniel R. Roe, Thomas E. Cheatham Journal of Chemical Theory and Computation EngineeringMolecular BiologyAmber PackageComputational ChemistryMolecular Dynamics	2013	7.3K
GROMACS 3.0: a package for molecular simulation and trajectory analysis Erik Lindahl, Berk Hess, David van der Spoel Journal of Molecular Modeling Biophysical ModelingEngineeringComputational BiologyMolecular BiologyMolecular Graphic	2001	6.9K
SCENIC: single-cell regulatory network inference and clustering Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman, Nature Methods Functional GenomicsEngineeringMedicineBiological NetworkComputational Biology	2017	6.5K
Reversed graph embedding resolves complex single-cell trajectories Xiaojie Qiu, Qi Mao, Ying Tang, Nature Methods Graph TheoryMedicineBiological NetworkComputational BiologyNetwork Analysis	2017	5K
RNA velocity of single cells Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Nature Rna VelocitySingle Cell SequencingMedicineRna BiologyGene Expression	2018	4.3K
mRNA-Seq whole-transcriptome analysis of a single cell Fuchou Tang, Cátálin Bárbácioru, Yangzhou Wang, Nature Methods Single Cell SequencingMedicineSingle-cell BiologySingle-cell GenomicsTranscriptomics Technology	2009	3.9K
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data Greg Finak, Andrew McDavid, Masanao Yajima, Genome biology EngineeringGeneticsTranscriptional ChangesTranscriptomics TechnologyGenomics	2015	3.4K
Simultaneous epitope and transcriptome measurement in single cells Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Nature Methods Systems BiologySingle Cell SequencingMedicineOmicsCell Biology	2017	3.1K

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