Concepedia

Substitution Models

Substitution Models is a probabilistic framework within phylogenetic sequence analysis that specifies the relative rates at which nucleotide or amino acid states replace one another over evolutionary time, distinguishing it from other evolutionary models by quantifying state transition frequencies along sequence alignments.

639

Publications

238.4K

Citations

1.4K

Authors

607

Institutions

Publications per year

2017–2026

115

Parents

Publications

639

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

Koichiro Tamura, Daniel G. Peterson, Nora Peterson et al. · Molecular Biology and Evolution · 2011 · 40.3K citations · Full text

, , +17

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 34.3K citations · Full text

, , +12

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist, Maxim Teslenko, Paul van der Mark et al. · Systematic Biology · 2012 · 28K citations · Full text

, , +17

MODELTEST: testing the model of DNA substitution.

David Posada, Keith A. Crandall · Bioinformatics · 1998 · 20.1K citations

, , +13

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Remco Bouckaert, Joseph Heled, Denise Kühnert et al. · PLoS Computational Biology · 2014 · 7K citations · Full text

, , +17

1–5 of 639

Authors

1.4K

  1. ZY
    Ziheng Yang

    University College London, United Kingdom

    20 publications · 10.8K citations

    20

    h-index

  2. DP
    David Posada

    Universidade de Vigo, Spain

    15 publications · 32K citations

    15

    h-index

  3. NG
    Nick Goldman

    European Bioinformatics Institute, United Kingdom

    16 publications · 7.1K citations

    15

    h-index

  4. SL
    Sergei L. Kosakovsky Pond

    University of California San Diego, United States

    13 publications · 3.8K citations

    13

    h-index

  5. NL
    Nicolas Lartillot

    Centre National de la Recherche Scientifique, France

    12 publications · 3.3K citations

    12

    h-index

1–5 of 1.4K

Institutions

607

  1. University College London

    London, United Kingdom

    21 h-index

    41 publications

    12.8K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    20 h-index

    52 publications

    12K citations

  3. University of California, Berkeley

    Berkeley, United States

    19 h-index

    38 publications

    31K citations

  4. The University of Sydney

    Sydney, Australia

    16 h-index

    36 publications

    8.1K citations

  5. University of Cambridge

    Cambridge, United Kingdom

    16 h-index

    23 publications

    7K citations

  6. Pennsylvania State University

    State College, United States

    16 h-index

    20 publications

    42.1K citations

  7. Australian National University

    Canberra, Australia

    16 h-index

    36 publications

    13.3K citations

  8. Universidade de Vigo

    Vigo, Spain

    14 h-index

    28 publications

    14.2K citations

1–8 of 607

Venues

  1. Molecular Biology and Evolution

    MBE · 146 publications · 91K citations

    70

    h-index

  2. Systematic Biology

    51 publications · 40.2K citations

    41

    h-index

  3. Journal of Molecular Evolution

    36 publications · 7K citations

    25

    h-index

  4. Bioinformatics

    29 publications · 56.3K citations

    21

    h-index

  5. Genetics

    22 publications · 3.2K citations

    20

    h-index

1–5