Concepedia

Structural Sequence Alignment

Structural Sequence Alignment is a sequence alignment method that incorporates three-dimensional structural information of biomolecules as the primary criterion for aligning residues, distinguishing it from conventional sequence-based alignment techniques by prioritizing spatial conformational similarity over linear sequence homology.

175

Publications

11.8K

Citations

722

Authors

327

Institutions

Publications per year

2017–2026

16

Variants

3D Sequence AlignmentStructure-based Sequence Alignment

Parents

Publications

175

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

Gabriel Cornilescu, Frank Delaglio, Ad Bax · Journal of Biomolecular NMR · 1999 · 3K citations

, , +14

Significant Improvement in Accuracy of Multiple Protein Sequence Alignments by Iterative Refinement as Assessed by Reference to Structural Alignments

Osamu Gotoh · Journal of Molecular Biology · 1996 · 329 citations

, , +17

Structural Evolution of the Protein Kinase–Like Superfamily

Eric D. Scheeff, Philip E. Bourne · PLoS Computational Biology · 2005 · 270 citations · Full text

, , +16

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

Aurélie Lescoute · Nucleic Acids Research · 2005 · 230 citations · Full text

, , +17

Photoactive yellow protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily

Jean‐Luc Pellequer, Karen Wager‐Smith, Steve A. Kay et al. · Proceedings of the National Academy of Sciences · 1998 · 229 citations · Full text

, , +13

1–5 of 175

Authors

722

  1. JG
    Jan Gorodkin

    University of Copenhagen, Denmark

    5 publications · 234 citations

    5

    h-index

  2. JH
    Jakob H. Havgaard

    University of Copenhagen, Denmark

    4 publications · 218 citations

    4

    h-index

  3. KA
    Kiyoshi Asai

    The University of Tokyo, Japan

    3 publications · 155 citations

    3

    h-index

  4. JJ
    Joseph J. Gillespie

    University of Maryland, Baltimore, United States

    3 publications · 271 citations

    3

    h-index

  5. EJ
    Elizabeth J. Goldsmith

    The University of Texas Southwestern Medical Center, United States

    2 publications · 90 citations

    2

    h-index

1–5 of 722

Institutions

327

  1. National Institutes of Health

    Bethesda, United States

    7 h-index

    23 publications

    9.7K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    6 h-index

    8 publications

    471 citations

  3. University of Illinois Urbana-Champaign

    Urbana, United States

    4 h-index

    7 publications

    606 citations

  4. Howard Hughes Medical Institute

    Chevy Chase, United States

    4 h-index

    6 publications

    198 citations

  5. California Institute of Technology

    Pasadena, United States

    4 h-index

    15 publications

    1.3K citations

  6. Yale University

    New Haven, United States

    4 h-index

    10 publications

    286 citations

  7. Texas A&M University

    College Station, United States

    4 h-index

    10 publications

    421 citations

  8. The University of Tokyo

    Tokyo, Japan

    4 h-index

    13 publications

    388 citations

1–8 of 327

Venues

  1. Nucleic Acids Research

    13 publications · 805 citations

    12

    h-index

  2. Journal of Biological Chemistry

    JBC · 11 publications · 459 citations

    11

    h-index

  3. Biochemistry

    11 publications · 357 citations

    10

    h-index

  4. Bioinformatics

    9 publications · 267 citations

    9

    h-index

  5. Protein Science

    PS · 7 publications · 356 citations

    7

    h-index

1–5