Concepedia

Structural Ensemble Modeling

Structural Ensemble Modeling is a computational framework in structural biology that integrates multiple conformations of a biomolecule to represent its dynamic behavior, distinguished from static structural models by explicitly capturing conformational heterogeneity and flexibility under physiological conditions.

157

Publications

11.1K

Citations

587

Authors

268

Institutions

Publications per year

2017–2026

62

Parents

Publications

157

NUPACK: Analysis and design of nucleic acid systems

Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois et al. · Journal of Computational Chemistry · 2010 · 1.8K citations · Full text

, , +17

Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering

Giancarlo Tria, Haydyn D. T. Mertens, Michael Kachala et al. · IUCrJ · 2015 · 628 citations · Full text

, , +17

<i>Flexible-meccano:</i> a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables

Valéry Ozenne, Frédéric Bauer, Loïc Salmon et al. · Bioinformatics · 2012 · 375 citations · Full text

, , +17

Disease-Associated Mutations That Alter the RNA Structural Ensemble

Matthew Halvorsen, Joshua S. Martin, Sam Broadaway et al. · PLoS Genetics · 2010 · 341 citations · Full text

, , +17

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins

Mihály Váradi, Simone Kosol, Pierre Lebrun et al. · Nucleic Acids Research · 2013 · 218 citations · Full text

, , +17

1–5 of 157

Authors

587

  1. JS
    James S. Fraser

    University of California, San Francisco, United States

    7 publications · 183 citations

    7

    h-index

  2. SA
    Stephanie A. Wankowicz

    Dana-Farber Cancer Institute, United States

    6 publications · 167 citations

    6

    h-index

  3. HV
    Henry van den Bedem

    Stanford Synchrotron Radiation Lightsource, United States

    6 publications · 275 citations

    6

    h-index

  4. TH
    Teresa Head‐Gordon

    University of California, Berkeley, United States

    6 publications · 538 citations

    6

    h-index

  5. BT
    Blake T. Riley

    Monash University, Australia

    5 publications · 151 citations

    5

    h-index

1–5 of 587

Institutions

268

  1. University of California, Berkeley

    Berkeley, United States

    8 h-index

    21 publications

    2.2K citations

  2. University of California, San Francisco

    San Francisco, United States

    8 h-index

    35 publications

    1.1K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    8 h-index

    33 publications

    7.3K citations

  4. University of Cambridge

    Cambridge, United Kingdom

    6 h-index

    19 publications

    1.9K citations

  5. Lawrence Berkeley National Laboratory

    Berkeley, United States

    6 h-index

    18 publications

    1.8K citations

  6. The Graduate Center, CUNY

    New York, United States

    5 h-index

    16 publications

    422 citations

  7. City College of New York

    New York, United States

    5 h-index

    5 publications

    151 citations

  8. University of Copenhagen

    Copenhagen, Denmark

    5 h-index

    12 publications

    524 citations

1–8 of 268

Venues

  1. Proteins Structure Function and Bioinformatics

    11 publications · 357 citations

    10

    h-index

  2. Bioinformatics

    9 publications · 1.1K citations

    9

    h-index

  3. Journal of the American Chemical Society

    JACS · 9 publications · 929 citations

    9

    h-index

  4. Protein Science

    PS · 8 publications · 404 citations

    8

    h-index

  5. Biophysical Journal

    8 publications · 212 citations

    8

    h-index

1–5