Concepedia

Structural Alignment Benchmarking

Structural Alignment Benchmarking is a systematic evaluation framework that assesses the accuracy and generalization of structural correspondences between domains or representations by measuring alignment quality against standardized tasks, datasets, and metrics within the field of cognitive science and artificial intelligence.

9

Publications

1.4K

Citations

33

Authors

23

Institutions

Publications per year

2017–2026

3

Parents

Publications

9

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

Ángel R. Ortíz, Charlie E. M. Strauss, Osvaldo Olmea · Protein Science · 2002 · 496 citations · Full text

, , +15

US-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes

Chengxin Zhang, Morgan Shine, Anna Marie Pyle et al. · Nature Methods · 2022 · 490 citations · Full text

, , +16

iAlign: a method for the structural comparison of protein–protein interfaces

Mu Gao, Jeffrey Skolnick · Bioinformatics · 2010 · 99 citations · Full text

, , +17

Opinions on Multiple Sequence Alignment, and an Empirical Comparison of Repeatability and Accuracy between POY and Structural Alignment

Karl M. Kjer, Joseph J. Gillespie, Karen A. Ober · Systematic Biology · 2007 · 97 citations · Full text

, , +8

Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function

Huiying Zhao, Yuedong Yang, Yaoqi Zhou · Bioinformatics · 2010 · 95 citations · Full text

, , +14

1–5 of 9

Authors

33

  1. MS
    Morgan Shine

    University of Michigan, United States

    2 publications · 522 citations

    2

    h-index

  2. CZ
    Chengxin Zhang

    University of Michigan, United States

    2 publications · 522 citations

    2

    h-index

  3. AM
    Anna Marie Pyle

    Howard Hughes Medical Institute, United States

    2 publications · 522 citations

    2

    h-index

  4. YZ
    Yang Zhang

    University of Michigan, United States

    2 publications · 522 citations

    2

    h-index

  5. ÁR
    Ángel R. Ortíz

    Universidad Autónoma de Madrid, Spain

    1 publications · 496 citations

    1

    h-index

1–5 of 33

Institutions

23

  1. Howard Hughes Medical Institute

    Chevy Chase, United States

    2 h-index

    4 publications

    1K citations

  2. Yale University

    New Haven, United States

    2 h-index

    6 publications

    1.6K citations

  3. University of Michigan

    Ann Arbor, United States

    2 h-index

    4 publications

    1K citations

  4. College of the Holy Cross

    Worcester, United States

    1 h-index

    1 publications

    97 citations

  5. Indiana University School of Medicine

    Indianapolis, United States

    1 h-index

    3 publications

    285 citations

  6. Indiana University – Purdue University Indianapolis

    Indianapolis, United States

    1 h-index

    3 publications

    285 citations

  7. Inserm

    Paris, France

    1 h-index

    1 publications

    61 citations

  8. Los Alamos National Laboratory

    Los Alamos, United States

    1 h-index

    1 publications

    496 citations

1–8 of 23

Venues

  1. Bioinformatics

    2 publications · 194 citations

    2

    h-index

  2. Protein Science

    PS · 1 publications · 496 citations

    1

    h-index

  3. Journal of Molecular Structure

    1 publications · 39 citations

    1

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 32 citations

    1

    h-index

  5. Nature Methods

    1 publications · 490 citations

    1

    h-index

1–5