Concepedia

Spatial Transcriptomics Integration

Spatial Transcriptomics Integration is a computational framework that combines spatially resolved transcriptomic data with complementary molecular or imaging datasets to reconstruct gene expression landscapes within their native tissue architectures, thereby enabling the contextual interpretation of transcriptional activity at cellular or subcellular resolution.

142

Publications

16.2K

Citations

1.4K

Authors

474

Institutions

Publications per year

2017–2026

141

Parents

Publications

142

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

Andrew L. Ji, Adam J. Rubin, Kim Thrane et al. · Cell · 2020 · 1.1K citations · Full text

, , +17

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

Reuben Moncada, Dalia Barkley, Florian Wagner et al. · Nature Biotechnology · 2020 · 1.1K citations

, , +16

Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease

Wei-Ting Chen, Ashley Lu, Katleen Craessaerts et al. · Cell · 2020 · 957 citations · Full text

, , +16

SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes

Marc Elosua-Bayés, Paula Nieto, Elisabetta Mereu et al. · Nucleic Acids Research · 2021 · 755 citations · Full text

, , +16

Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST

Yahui Long, Kok Siong Ang, Mengwei Li et al. · Nature Communications · 2023 · 594 citations · Full text

, , +16

1–5 of 142

Authors

1.4K

  1. JL
    Joakim Lundeberg

    KTH Royal Institute of Technology, Sweden

    8 publications · 3.3K citations

    8

    h-index

  2. LL
    Ludvig Larsson

    KTH Royal Institute of Technology, Sweden

    6 publications · 1.6K citations

    6

    h-index

  3. SA
    Sarah A. Teichmann

    Wellcome Sanger Institute, United Kingdom

    5 publications · 501 citations

    5

    h-index

  4. BJ
    Benjamin J. Raphael

    Princeton University, United States

    4 publications · 403 citations

    4

    h-index

  5. JS
    Julio Sáez-Rodríguez

    Heidelberg University, Germany

    4 publications · 327 citations

    4

    h-index

1–5 of 1.4K

Institutions

474

  1. KTH Royal Institute of Technology

    Stockholm, Sweden

    11 h-index

    54 publications

    14.9K citations

  2. Harvard University

    Cambridge, United States

    11 h-index

    31 publications

    3.3K citations

  3. Science for Life Laboratory

    Stockholm, Sweden

    11 h-index

    64 publications

    13.4K citations

  4. Chinese Academy of Sciences

    Beijing, China

    10 h-index

    29 publications

    2K citations

  5. Karolinska Institutet

    Stockholm, Sweden

    8 h-index

    36 publications

    1.9K citations

  6. University of Chinese Academy of Sciences

    Beijing, China

    8 h-index

    16 publications

    1.1K citations

  7. Broad Institute

    Cambridge, United States

    7 h-index

    28 publications

    3.7K citations

  8. Memorial Sloan Kettering Cancer Center

    New York, United States

    7 h-index

    19 publications

    2.5K citations

1–8 of 474

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 25 publications · 1K citations

    17

    h-index

  2. Nature Communications

    15 publications · 2.3K citations

    15

    h-index

  3. Nature Biotechnology

    6 publications · 1.8K citations

    6

    h-index

  4. Nucleic Acids Research

    5 publications · 1.1K citations

    5

    h-index

  5. Nature Methods

    4 publications · 907 citations

    4

    h-index

1–5