Concepedia

Spatial Transcriptomics Deconvolution

Spatial Transcriptomics Deconvolution is a computational method that belongs to the class of cell-type deconvolution techniques and specifically enables the inference of cell-type proportions and their spatial distribution within tissue sections by leveraging gene expression profiles from spatially resolved transcriptomics data.

100

Publications

14K

Citations

859

Authors

329

Institutions

Publications per year

2017–2026

99

Parents

Publications

100

Cell2location maps fine-grained cell types in spatial transcriptomics

Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann et al. · Nature Biotechnology · 2022 · 1.2K citations

, , +14

Spatial transcriptomics at subspot resolution with BayesSpace

Edward Zhao, Matthew R. Stone, Xing Ren et al. · Nature Biotechnology · 2021 · 1K citations · Full text

, , +12

Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease

Wei-Ting Chen, Ashley Lu, Katleen Craessaerts et al. · Cell · 2020 · 957 citations · Full text

, , +16

SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes

Marc Elosua-Bayés, Paula Nieto, Elisabetta Mereu et al. · Nucleic Acids Research · 2021 · 755 citations · Full text

, , +16

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity

Emelie Berglund, Jonas Maaskola, Niklas Schultz et al. · Nature Communications · 2018 · 619 citations · Full text

, , +17

1–5 of 100

Authors

859

  1. JL
    Joakim Lundeberg

    KTH Royal Institute of Technology, Sweden

    6 publications · 2.9K citations

    6

    h-index

  2. LL
    Ludvig Larsson

    KTH Royal Institute of Technology, Sweden

    4 publications · 1.1K citations

    4

    h-index

  3. GY
    Guo‐Cheng Yuan

    Dana-Farber Cancer Institute, United States

    3 publications · 354 citations

    3

    h-index

  4. FS
    Fredrik Salmén

    Science for Life Laboratory, Sweden

    3 publications · 1.1K citations

    3

    h-index

  5. ML
    Mingyao Li

    University of Pennsylvania, United States

    3 publications · 255 citations

    3

    h-index

1–5 of 859

Institutions

329

  1. KTH Royal Institute of Technology

    Stockholm, Sweden

    10 h-index

    42 publications

    16.2K citations

  2. Harvard University

    Cambridge, United States

    9 h-index

    18 publications

    1.2K citations

  3. Science for Life Laboratory

    Stockholm, Sweden

    9 h-index

    60 publications

    19.7K citations

  4. Karolinska Institutet

    Stockholm, Sweden

    7 h-index

    35 publications

    5K citations

  5. Chinese Academy of Sciences

    Beijing, China

    5 h-index

    12 publications

    1.6K citations

  6. Heidelberg University

    Heidelberg, Germany

    5 h-index

    14 publications

    1.5K citations

  7. Johns Hopkins Medicine

    Baltimore, United States

    4 h-index

    15 publications

    2.3K citations

  8. Centre for Genomic Regulation

    Barcelona, Spain

    4 h-index

    11 publications

    3.2K citations

1–8 of 329

Venues

  1. Nature Communications

    22 publications · 3.7K citations

    22

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 13 publications · 284 citations

    11

    h-index

  3. Nature Biotechnology

    6 publications · 3.3K citations

    6

    h-index

  4. Nature Methods

    5 publications · 597 citations

    5

    h-index

  5. Bioinformatics

    4 publications · 187 citations

    4

    h-index

1–5