Concepedia

Spatial Transcriptomics Comparison

Spatial Transcriptomics Comparison is a computational framework that systematically evaluates and contrasts gene expression patterns across distinct tissue regions by integrating spatial coordinates with transcriptomic data to reveal location-specific molecular signatures, distinguishing it from conventional bulk RNA sequencing analyses through its explicit incorporation of spatial context.

35

Publications

3.3K

Citations

435

Authors

197

Institutions

Publications per year

2017–2026

35

Parents

Publications

35

Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease

Wei-Ting Chen, Ashley Lu, Katleen Craessaerts et al. · Cell · 2020 · 957 citations · Full text

, , +16

Spatial transcriptomics of dorsal root ganglia identifies molecular signatures of human nociceptors

Diana Tavares‐Ferreira, Stephanie Shiers, Pradipta Ray et al. · Science Translational Medicine · 2022 · 453 citations · Full text

, , +17

A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics

Haoyang Li, Juexiao Zhou, Zhongxiao Li et al. · Nature Communications · 2023 · 246 citations · Full text

, , +15

Systematic comparison of sequencing-based spatial transcriptomic methods

Yue You, Yuting Fu, Lanxiang Li et al. · Nature Methods · 2024 · 171 citations · Full text

, , +12

Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver

Tallulah Andrews, Diana Nakib, Cátia T. Perciani et al. · Journal of Hepatology · 2024 · 159 citations · Full text

, , +17

1–5 of 35

Authors

435

  1. JC
    Jeffrey C. Reese

    The University of Texas at Dallas, United States

    2 publications · 479 citations

    2

    h-index

  2. SS
    Sabrina Schumacher

    German Cancer Research Center, Germany

    2 publications · 36 citations

    2

    h-index

  3. KO
    Konstantin Okonechnikov

    German Cancer Research Center, Germany

    2 publications · 36 citations

    2

    h-index

  4. RW
    Robert W. Gereau

    Washington University in St. Louis, United States

    2 publications · 479 citations

    2

    h-index

  5. WR
    Wenle Ren

    Westlake University, China

    2 publications · 183 citations

    2

    h-index

1–5 of 435

Institutions

197

  1. University of Toronto

    Toronto, Canada

    5 h-index

    29 publications

    2.5K citations

  2. Karolinska Institutet

    Stockholm, Sweden

    4 h-index

    13 publications

    434 citations

  3. The University of Melbourne

    Melbourne, Australia

    4 h-index

    10 publications

    382 citations

  4. Harvard University

    Cambridge, United States

    4 h-index

    12 publications

    856 citations

  5. University Hospital Heidelberg

    Heidelberg, Germany

    3 h-index

    9 publications

    186 citations

  6. Heidelberg University

    Heidelberg, Germany

    3 h-index

    27 publications

    510 citations

  7. Science for Life Laboratory

    Stockholm, Sweden

    3 h-index

    12 publications

    3.1K citations

  8. Hospital for Sick Children

    Toronto, Canada

    3 h-index

    10 publications

    754 citations

1–8 of 197

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 164 citations

    6

    h-index

  2. Nature Communications

    4 publications · 375 citations

    4

    h-index

  3. Genome biology

    3 publications · 200 citations

    3

    h-index

  4. Nature Neuroscience

    2 publications · 136 citations

    2

    h-index

  5. Journal of Clinical Investigation

    JCI · 1 publications · 46 citations

    1

    h-index

1–5