Concepedia

Spatial Co-expression Analysis

Spatial Co-Expression Analysis is a gene co-expression analysis method that integrates spatial transcriptomic data to identify and quantify the coordinated expression of genes within specific tissue architectures, distinguishing it from conventional co-expression approaches by explicitly preserving and leveraging the spatial localization of gene expression.

44

Publications

2.8K

Citations

199

Authors

93

Institutions

Publications per year

2017–2026

25

Parents

Publications

44

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

Jian Hu, Xiangjie Li, Kyle Coleman et al. · Nature Methods · 2021 · 1.1K citations

, , +17

High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq

Yang Liu, Marcello DiStasio, Graham Su et al. · Nature Biotechnology · 2023 · 366 citations · Full text

, , +17

Advances in spatial transcriptomics and its applications in cancer research

Yuanli Zuo, Gang Li, Wenrong Liu et al. · Molecular Cancer · 2024 · 143 citations · Full text

, , +17

SpatialDM for rapid identification of spatially co-expressed ligand–receptor and revealing cell–cell communication patterns

Zhuoxuan Li, Tianjie Wang, Pentao Liu et al. · Nature Communications · 2023 · 104 citations · Full text

, , +17

Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos

Vikas Trivedi, Harry M. T. Choi, Scott E. Fraser et al. · Development · 2018 · 78 citations · Full text

, , +15

1–5 of 44

Authors

199

  1. HA
    Hiromitsu Asashima

    University of Tsukuba, Japan

    3 publications · 400 citations

    3

    h-index

  2. PB
    Pino Bordignon

    University of Lausanne, Switzerland

    3 publications · 400 citations

    3

    h-index

  3. SH
    Stephanie Halene

    Yale University, United States

    3 publications · 400 citations

    3

    h-index

  4. AE
    Archibald Enninful

    Yale University, United States

    3 publications · 400 citations

    3

    h-index

  5. RF
    Rong Fan

    Yale University, United States

    3 publications · 400 citations

    3

    h-index

1–5 of 199

Institutions

93

  1. Johns Hopkins University

    Baltimore, United States

    4 h-index

    12 publications

    201 citations

  2. Yale University

    New Haven, United States

    4 h-index

    46 publications

    6.1K citations

  3. Yale Cancer Center

    New Haven, United States

    3 h-index

    18 publications

    2.4K citations

  4. University of Southern California

    Los Angeles, United States

    2 h-index

    3 publications

    193 citations

  5. Allen Institute

    Seattle, United States

    2 h-index

    2 publications

    39 citations

  6. Hong Kong Science and Technology Parks Corporation

    Shatin, Hong Kong

    2 h-index

    4 publications

    232 citations

  7. University of Copenhagen

    Copenhagen, Denmark

    2 h-index

    5 publications

    170 citations

  8. Allen Institute for Brain Science

    Seattle, United States

    2 h-index

    2 publications

    39 citations

1–8 of 93

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 5 publications · 69 citations

    5

    h-index

  2. Nature Communications

    3 publications · 141 citations

    5

    h-index

  3. PLoS Computational Biology

    4 publications · 204 citations

    4

    h-index

  4. Bioinformatics

    3 publications · 62 citations

    3

    h-index

  5. BMC Genomics

    2 publications · 74 citations

    2

    h-index

1–5