Concepedia

Spatial Cell State Modeling

Spatial Cell State Modeling is a computational framework that integrates spatially resolved molecular data to characterize and predict the phenotypic states of individual cells within their native tissue architectures, distinguishing itself by explicitly accounting for the influence of local microenvironments on cellular behavior.

20

Publications

774

Citations

100

Authors

67

Institutions

Publications per year

2017–2026

11

Parents

Publications

20

Graph deep learning for the characterization of tumour microenvironments from spatial protein profiles in tissue specimens

Zhenqin Wu, Alexandro E. Trevino, Eric Q. Wu et al. · Nature Biomedical Engineering · 2022 · 151 citations

, , +17

From single cells to tissue architecture—a bottom-up approach to modelling the spatio-temporal organisation of complex multi-cellular systems

Joerg Galle, Martin Hoffmann, Gabriela Aust · Journal of Mathematical Biology · 2008 · 94 citations

, , +16

Amoeba-based computing for traveling salesman problem: Long-term correlations between spatially separated individual cells of Physarum polycephalum

Masashi Aono, Song-Ju Kim, Masahiko Hara · Biosystems · 2013 · 60 citations

, , +13

Compartmental and Spatial Rule-Based Modeling with Virtual Cell

Michael L. Blinov, James C. Schaff, Dan Vasilescu et al. · Biophysical Journal · 2017 · 54 citations · Full text

, , +13

Quantification of spatial and phenotypic heterogeneity in an agent-based model of tumour-macrophage interactions

Joshua A. Bull, Helen M. Byrne · PLoS Computational Biology · 2023 · 37 citations · Full text

, , +17

1–5 of 20

Authors

100

  1. JA
    Joshua A. Bull

    University of Oxford, United Kingdom

    1 publications · 37 citations

    1

    h-index

  2. KS
    Kyle Swanson

    Stanford University, United States

    1 publications · 151 citations

    1

    h-index

  3. DJ
    Dominik J. Otto

    Fred Hutch Cancer Center, United States

    1 publications · 35 citations

    1

    h-index

  4. VN
    Violeta N. Kovacheva

    University of Warwick, United Kingdom

    1 publications · 20 citations

    1

    h-index

  5. HB
    H. Blaize D’Angio

    Enable Biosciences (United States), United States

    1 publications · 151 citations

    1

    h-index

1–5 of 100

Institutions

67

  1. University of Oxford

    Oxford, United Kingdom

    2 h-index

    4 publications

    110 citations

  2. Institut national de recherche en sciences et technologies du numérique

    Le Chesnay-Rocquencourt, France

    1 h-index

    2 publications

    56 citations

  3. Enable Biosciences (United States)

    San Francisco, United States

    1 h-index

    7 publications

    1.1K citations

  4. University Hospitals Coventry and Warwickshire NHS Trust

    Coventry, United Kingdom

    1 h-index

    1 publications

    20 citations

  5. University of Washington

    Seattle, United States

    1 h-index

    1 publications

    35 citations

  6. University of Zurich

    Zurich, Switzerland

    1 h-index

    6 publications

    150 citations

  7. Instituto do Câncer do Estado de São Paulo

    São Paulo, Brazil

    1 h-index

    7 publications

    147 citations

  8. Columbia University

    New York, United States

    1 h-index

    1 publications

    151 citations

1–8 of 67

Venues

  1. Journal of Theoretical Biology

    2 publications · 59 citations

    2

    h-index

  2. Journal of Mathematical Biology

    2 publications · 116 citations

    2

    h-index

  3. PLoS Computational Biology

    2 publications · 66 citations

    2

    h-index

  4. Biosystems

    1 publications · 60 citations

    1

    h-index

  5. 1

    h-index

1–5