Concepedia

Single-cell Epigenomics Integration

Single-Cell Epigenomics Integration is a computational framework that synthesizes epigenomic data across individual cells to reconstruct regulatory landscapes with single-cell resolution, enabling the dissection of cellular heterogeneity in gene regulation.

21

Publications

2.3K

Citations

187

Authors

77

Institutions

Publications per year

2017–2026

21

Parents

Publications

21

Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain

Blue B. Lake, Song Chen, Brandon C. Sos et al. · Nature Biotechnology · 2017 · 1.1K citations · Full text

, , +16

EpiScanpy: integrated single-cell epigenomic analysis

Anna Danese, Maria Lucia Richter, Kridsadakorn Chaichoompu et al. · Nature Communications · 2021 · 144 citations · Full text

, , +17

Multi-omic single-cell velocity models epigenome–transcriptome interactions and improves cell fate prediction

Chen Li, Maria Virgilio, Kathleen L. Collins et al. · Nature Biotechnology · 2022 · 137 citations · Full text

, , +16

Integrative single-cell analysis by transcriptional and epigenetic states in human adult brain

Blue B. Lake, Song Chen, Brandon C. Sos et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 118 citations · Full text

, , +17

Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions

Haiqing Xiong, Yingjie Luo, Qianhao Wang et al. · Nature Methods · 2021 · 97 citations

, , +12

1–5 of 21

Authors

187

  1. MC
    Maria Colomé‐Tatché

    University of Groningen, Netherlands

    3 publications · 258 citations

    3

    h-index

  2. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    3 publications · 258 citations

    3

    h-index

  3. PV
    Peter V. Kharchenko

    Harvard University, United States

    3 publications · 1.3K citations

    3

    h-index

  4. YC
    Yun C. Yung

    University of California San Diego, United States

    2 publications · 1.2K citations

    2

    h-index

  5. AD
    Anna Danese

    Helmholtz Zentrum München, Germany

    2 publications · 174 citations

    2

    h-index

1–5 of 187

Institutions

77

  1. Harvard University

    Cambridge, United States

    4 h-index

    11 publications

    3K citations

  2. Howard Hughes Medical Institute

    Chevy Chase, United States

    3 h-index

    6 publications

    360 citations

  3. Technical University of Munich

    Munich, Germany

    3 h-index

    8 publications

    690 citations

  4. Helmholtz Zentrum München

    Munich, Germany

    3 h-index

    13 publications

    1.2K citations

  5. University of California San Diego

    San Diego, United States

    3 h-index

    22 publications

    9K citations

  6. Dana-Farber Cancer Institute

    Boston, United States

    2 h-index

    7 publications

    561 citations

  7. University of Michigan

    Ann Arbor, United States

    2 h-index

    5 publications

    611 citations

  8. Tsinghua University

    Beijing, China

    2 h-index

    4 publications

    153 citations

1–8 of 77

Venues

  1. Nature Communications

    4 publications · 313 citations

    4

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 226 citations

    4

    h-index

  3. Nature Methods

    2 publications · 180 citations

    2

    h-index

  4. Nature Biotechnology

    2 publications · 1.2K citations

    2

    h-index

  5. PubMed

    Repository · 1 publications · 40 citations

    1

    h-index

1–5