Single-cell Analysis Publications

Publications in Single-cell Analysis

Explore the most influential research papers and scholarly works that have shaped Single-cell Analysis. Use the concept filter below to focus on a specific sub-area of research.

Single-cell Analysis

6.1K

Publications

803K

Citations

Showing yearly statistics from 2000-2026.

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	Year	Citations
Comprehensive Integration of Single-Cell Data Tim Stuart, Andrew Butler, Paul Hoffman, Cell EngineeringBiomedical Data IntegrationData ScienceSingle Cell SequencingMedicine	2019	16K
Integrating single-cell transcriptomic data across different conditions, technologies, and species Andrew Butler, Paul Hoffman, Peter Smibert, Nature Biotechnology EngineeringGeneticsMultiomicsSingle-cell Transcriptomic DataTranscriptomics Technology	2018	14.1K
Robust enumeration of cell subsets from tissue expression profiles Aaron M. Newman, Chih Long Liu, Michael R. Green, Nature Methods EngineeringMedicineComputational BiologyRobust EnumerationGene Expression Profiling	2015	13.6K
Fast, sensitive and accurate integration of single-cell data with Harmony Ilya Korsunsky, Nghia Millard, Jean Fan, Nature Methods BioinformaticsEngineeringData ScienceSingle Cell SequencingMedicine	2019	9.5K
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets Evan Z. Macosko, Anindita Basu, Rahul Satija, Cell Systems BiologyFunctional GenomicsSingle Cell SequencingMedicineNatural Sciences	2015	7.6K
Spatial reconstruction of single-cell gene expression data Rahul Satija, Jeffrey A. Farrell, David Gennert, Nature Biotechnology Functional GenomicsEngineeringSingle Cell SequencingMedicineSpatial Omics	2015	7.3K
SCENIC: single-cell regulatory network inference and clustering Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman, Nature Methods Functional GenomicsEngineeringMedicineBiological NetworkComputational Biology	2017	6.5K
Stochastic Gene Expression in a Single Cell Michael B. Elowitz, Arnold J. Levine, Eric D. Siggia, Science EngineeringGene Regulatory NetworkCellular PhysiologySingle Cell SequencingUncertainty Quantification	2002	5.6K
Reversed graph embedding resolves complex single-cell trajectories Xiaojie Qiu, Qi Mao, Ying Tang, Nature Methods Graph TheoryMedicineBiological NetworkComputational BiologyNetwork Analysis	2017	5K
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage Dvir Aran, Agnieszka Looney, Leqian Liu, Nature Immunology Lung Single-cell SequencingReference-based AnalysisTransitional Profibrotic MacrophageInflammatory Lung DiseaseSingle Cell Sequencing	2019	5K
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq Itay Tirosh, Benjamin Izar, Sanjay M. Prakadan, Science Melanoma TumorsImmunologyBiological MicroenvironmentsTumor BiologyOncology	2016	5K
Determining cell type abundance and expression from bulk tissues with digital cytometry Aaron M. Newman, Chloé B. Steen, Chih Long Liu, Nature Biotechnology Human CellDigital CytometryMedicineSingle Cell SequencingImmunophenotyping	2019	4.6K

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