Concepedia

Simultaneous Alignment

Simultaneous Alignment is a phylogenetic inference method that jointly estimates sequence alignment and evolutionary tree topology by co-optimizing both processes under a unified statistical framework, thereby distinguishing it from sequential approaches that reconstruct alignment prior to tree estimation.

91

Publications

5.9K

Citations

285

Authors

147

Institutions

Publications per year

2017–2026

16

Variants

Direct Optimization

Parents

Publications

91

Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

Kevin Liu, S. Raghavan, Serita M. Nelesen et al. · Science · 2009 · 524 citations

, , +16

A method for simultaneous alignment of multiple protein structures

Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson · Proteins Structure Function and Bioinformatics · 2004 · 444 citations

, , +14

SubUNets: End-to-End Hand Shape and Continuous Sign Language Recognition

Necati Cihan Camgöz, Simon Hadfield, Oscar Koller et al. · 2017 · 366 citations

, , +16

Alignment and integration of spatial transcriptomics data

Ron Zeira, Max Land, Alexander Strzalkowski et al. · Nature Methods · 2022 · 306 citations · Full text

, , +13

Aligned 18S and Insect Phylogeny

Karl M. Kjer · Systematic Biology · 2004 · 302 citations · Full text

, , +17

1–5 of 91

Authors

285

  1. KI
    Katsushi Ikeuchi

    The University of Tokyo, Japan

    3 publications · 97 citations

    3

    h-index

  2. RB
    Rolf Backofen

    University of Freiburg, Germany

    3 publications · 111 citations

    3

    h-index

  3. FK
    Fumiko Kimura

    Tohoku University, Japan

    3 publications · 139 citations

    3

    h-index

  4. JS
    Jens Stoye

    Bielefeld University, Germany

    3 publications · 308 citations

    3

    h-index

  5. SW
    Sebastian Will

    University of Freiburg, Germany

    3 publications · 111 citations

    3

    h-index

1–5 of 285

Institutions

147

  1. University of California, Berkeley

    Berkeley, United States

    5 h-index

    14 publications

    494 citations

  2. Bielefeld University

    Bielefeld, Germany

    3 h-index

    6 publications

    1K citations

  3. National Institute for Materials Science

    Tsukuba, Japan

    3 h-index

    7 publications

    332 citations

  4. University of Freiburg

    Freiburg im Breisgau, Germany

    3 h-index

    13 publications

    527 citations

  5. Tel Aviv University

    Tel Aviv, Israel

    2 h-index

    4 publications

    1.3K citations

  6. University of Waterloo

    Waterloo, Canada

    2 h-index

    4 publications

    68 citations

  7. Princeton University

    Princeton, United States

    2 h-index

    7 publications

    1.3K citations

  8. Leipzig University

    Leipzig, Germany

    2 h-index

    2 publications

    57 citations

1–8 of 147

Venues

  1. Bioinformatics

    7 publications · 634 citations

    7

    h-index

  2. BMC Bioinformatics

    4 publications · 174 citations

    4

    h-index

  3. Nucleic Acids Research

    4 publications · 165 citations

    4

    h-index

  4. 3

    h-index

  5. Journal of Computational Biology

    3 publications · 86 citations

    3

    h-index

1–5