Concepedia

Side-chain Modeling

Side-Chain Modeling is a computational method within template-based protein structure prediction that specifically determines the three-dimensional conformations of amino acid side chains by optimizing their rotameric states relative to a fixed backbone scaffold derived from homologous templates.

324

Publications

55.2K

Citations

929

Authors

388

Institutions

Publications per year

2017–2026

38

Parents

Publications

324

Improved methods for building protein models in electron density maps and the location of errors in these models

T. Alwyn Jones, Jin-yu Zou, Sandra W. Cowan et al. · Acta Crystallographica Section A Foundations of Crystallography · 1991 · 12.7K citations

, , +16

LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery

Roman A. Laskowski, Mark B. Swindells · Journal of Chemical Information and Modeling · 2011 · 6.5K citations

, , +17

Improved side‐chain torsion potentials for the Amber ff99SB protein force field

Kresten Lindorff‐Larsen, Stefano Piana, Kim Palmö et al. · Proteins Structure Function and Bioinformatics · 2010 · 6.3K citations · Full text

, , +17

ff19SB: Amino-Acid-Specific Protein Backbone Parameters Trained against Quantum Mechanics Energy Surfaces in Solution

Chuan Tian, Koushik Kasavajhala, Kellon Belfon et al. · Journal of Chemical Theory and Computation · 2019 · 2.4K citations · Full text

, , +15

Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8

Elmar Krieger, Keehyoung Joo, Jinwoo Lee et al. · Proteins Structure Function and Bioinformatics · 2009 · 1.4K citations · Full text

, , +17

1–5 of 324

Authors

929

  1. AP
    András Perczel

    Eötvös Loránd University, Hungary

    12 publications · 301 citations

    11

    h-index

  2. ÖF
    Ödön Farkas

    Eötvös Loránd University, Hungary

    9 publications · 259 citations

    9

    h-index

  3. TL
    Tom L. Blundell

    University of Cambridge, United Kingdom

    7 publications · 388 citations

    7

    h-index

  4. IG
    Imre G. Csizmadia

    University of Toronto, Canada

    7 publications · 239 citations

    7

    h-index

  5. RL
    Roland L. Dunbrack

    Fox Chase Cancer Center, United States

    6 publications · 3.9K citations

    6

    h-index

1–5 of 929

Institutions

388

  1. Centre National de la Recherche Scientifique

    Paris, France

    12 h-index

    32 publications

    1.7K citations

  2. Eötvös Loránd University

    Budapest, Hungary

    11 h-index

    35 publications

    983 citations

  3. University of Cambridge

    Cambridge, United Kingdom

    9 h-index

    26 publications

    870 citations

  4. University of Washington

    Seattle, United States

    9 h-index

    32 publications

    15.8K citations

  5. Howard Hughes Medical Institute

    Chevy Chase, United States

    9 h-index

    17 publications

    1.8K citations

  6. Rice University

    Houston, United States

    8 h-index

    14 publications

    466 citations

  7. University of Toronto

    Toronto, Canada

    8 h-index

    23 publications

    678 citations

  8. Harvard University

    Cambridge, United States

    8 h-index

    16 publications

    7.5K citations

1–8 of 388

Venues

  1. Proteins Structure Function and Bioinformatics

    53 publications · 13.2K citations

    34

    h-index

  2. Journal of Molecular Biology

    JMB · 26 publications · 4.7K citations

    24

    h-index

  3. Protein Science

    PS · 19 publications · 2.3K citations

    18

    h-index

  4. Protein Engineering Design and Selection

    PEDS · 14 publications · 617 citations

    13

    h-index

  5. Journal of Computational Chemistry

    15 publications · 982 citations

    13

    h-index

1–5