Concepedia

Short-read Transcriptomics

Short-Read Transcriptomics is a transcriptomic analysis approach that leverages high-throughput sequencing of short RNA fragments (typically 50–300 bp) to profile gene expression, identify transcript variants, and reconstruct transcriptomes, distinguished from long-read methods by its reliance on shorter sequence reads generated by platforms such as Illumina.

39

Publications

2.9K

Citations

310

Authors

142

Institutions

Publications per year

2017–2026

28

Parents

Publications

39

Six reference-quality genomes reveal evolution of bat adaptations

David Jebb, Zixia Huang, Martin Pippel et al. · Nature · 2020 · 383 citations · Full text

, , +17

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

Christopher I. Keeling, Macaire M. S. Yuen, Nancy Liao et al. · Genome biology · 2013 · 318 citations · Full text

, , +16

t-Distributed Stochastic Neighbor Embedding (t-SNE): A tool for eco-physiological transcriptomic analysis

Matthew Cieslak, Ann M. Castelfranco, Vittoria Roncalli et al. · Marine Genomics · 2019 · 300 citations · Full text

, , +13

BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA

Lars Gabriel, Tomáš Brůna, Katharina J. Hoff et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2023 · 237 citations · Full text

, , +16

Modeling non-uniformity in short-read rates in RNA-Seq data

Jun Li, Hui Jiang, Wing Hung Wong · Genome biology · 2010 · 204 citations · Full text

, , +11

1–5 of 39

Authors

310

  1. MZ
    Mihaela Zavolan

    University of Basel, Switzerland

    2 publications · 78 citations

    2

    h-index

  2. AA
    Abdullah Abood

    University of Virginia, United States

    2 publications · 33 citations

    2

    h-index

  3. JS
    Jamie Saquing

    University of Virginia, United States

    2 publications · 33 citations

    2

    h-index

  4. FG
    Foivos Gypas

    University of Basel, Switzerland

    2 publications · 78 citations

    2

    h-index

  5. CR
    Charles R. Farber

    University of Virginia, United States

    2 publications · 33 citations

    2

    h-index

1–5 of 310

Institutions

142

  1. Pacific Biosciences (United States)

    Menlo Park, United States

    3 h-index

    7 publications

    1.6K citations

  2. Howard Hughes Medical Institute

    Chevy Chase, United States

    3 h-index

    3 publications

    453 citations

  3. Joint Genome Institute

    Berkeley, United States

    3 h-index

    12 publications

    1.2K citations

  4. Heidelberg University

    Heidelberg, Germany

    2 h-index

    14 publications

    306 citations

  5. University of Bern

    Bern, Switzerland

    2 h-index

    4 publications

    156 citations

  6. University of Basel

    Basel, Switzerland

    2 h-index

    2 publications

    78 citations

  7. Rockefeller University

    New York, United States

    2 h-index

    6 publications

    826 citations

  8. University of Washington

    Seattle, United States

    2 h-index

    3 publications

    102 citations

1–8 of 142

Venues

  1. Genome biology

    6 publications · 923 citations

    6

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 297 citations

    4

    h-index

  3. Frontiers in Genetics

    2 publications · 63 citations

    2

    h-index

  4. Scientific Data

    2 publications · 71 citations

    2

    h-index

  5. Scientific Reports

    2 publications · 52 citations

    2

    h-index

1–5