Concepedia

Sequence-structure Alignment

Sequence-Structure Alignment is a computational method in structural genomics that aligns a protein sequence to a known three-dimensional structural template to infer spatial conformation by identifying residue-level correspondences between sequence features and structural elements.

429

Publications

45.3K

Citations

1.4K

Authors

496

Institutions

Publications per year

2017–2026

39

Parents

Publications

429

SCOP: A structural classification of proteins database for the investigation of sequences and structures

Alexey G. Murzin, Steven E. Brenner, Tim Hubbard et al. · Journal of Molecular Biology · 1995 · 6.3K citations

, , +11

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

Joseph Dundas, Zhengbiao Ouyang, Jeng‐Sen Tseng et al. · Nucleic Acids Research · 2006 · 1.7K citations · Full text

, , +16

ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins

Patrice Gouet · Nucleic Acids Research · 2003 · 1.5K citations · Full text

, , +13

Enhanced genome annotation using structural profiles in the program 3D-PSSM 1 1Edited by J. Thornton

Lawrence A. Kelley, Robert M. MacCallum, Michael J.E. Sternberg · Journal of Molecular Biology · 2000 · 1.5K citations

, , +15

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions

Kim T. Simons, Charles Kooperberg, Enoch S. Huang et al. · Journal of Molecular Biology · 1997 · 1.4K citations

, , +17

1–5 of 429

Authors

1.4K

  1. RB
    Rolf Backofen

    University of Freiburg, Germany

    11 publications · 1K citations

    11

    h-index

  2. AŠ
    Andrej Šali

    University of California, San Francisco, United States

    10 publications · 2.2K citations

    10

    h-index

  3. SH
    Stephen H. Bryant

    National Center for Biotechnology Information, United States

    9 publications · 721 citations

    9

    h-index

  4. SW
    Sebastian Will

    University of Freiburg, Germany

    7 publications · 714 citations

    7

    h-index

  5. BH
    Barry Honig

    Columbia University, United States

    6 publications · 579 citations

    6

    h-index

1–5 of 1.4K

Institutions

496

  1. Howard Hughes Medical Institute

    Chevy Chase, United States

    18 h-index

    51 publications

    7.3K citations

  2. National Institutes of Health

    Bethesda, United States

    13 h-index

    71 publications

    6K citations

  3. National Center for Biotechnology Information

    Bethesda, United States

    12 h-index

    61 publications

    5.7K citations

  4. University College London

    London, United Kingdom

    10 h-index

    31 publications

    2.5K citations

  5. Centre National de la Recherche Scientifique

    Paris, France

    9 h-index

    25 publications

    7.4K citations

  6. University of California, San Francisco

    San Francisco, United States

    8 h-index

    41 publications

    19.1K citations

  7. San Diego Supercomputer Center

    San Diego, United States

    8 h-index

    17 publications

    1.9K citations

  8. Columbia University

    New York, United States

    8 h-index

    16 publications

    1.6K citations

1–8 of 496

Venues

  1. Nucleic Acids Research

    48 publications · 10.8K citations

    35

    h-index

  2. Bioinformatics

    55 publications · 3.5K citations

    32

    h-index

  3. Proteins Structure Function and Bioinformatics

    45 publications · 2.9K citations

    29

    h-index

  4. Journal of Molecular Biology

    JMB · 26 publications · 12.2K citations

    23

    h-index

  5. BMC Bioinformatics

    16 publications · 736 citations

    13

    h-index

1–5