Concepedia

Sequence-based Contact Prediction

Sequence-Based Contact Prediction is a computational method that infers interresidue contacts in protein structures exclusively from evolutionary sequence information, distinguishing it from structure-based or physics-based prediction approaches.

125

Publications

11.1K

Citations

358

Authors

202

Institutions

Publications per year

2017–2026

53

Variants

Sequence-based Protein Contact Prediction

Parents

Publications

125

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

David T. Jones, Daniel Buchan, Domenico Cozzetto et al. · Bioinformatics · 2011 · 823 citations · Full text

, , +12

Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models

Magnus Ekeberg, Cecilia Lövkvist, Yueheng Lan et al. · Physical Review E · 2013 · 736 citations · Full text

, , +13

Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era

Hetunandan Kamisetty, Sergey Ovchinnikov, David Baker · Proceedings of the National Academy of Sciences · 2013 · 734 citations · Full text

, , +14

I‐TASSER: Fully automated protein structure prediction in CASP8

Yang Zhang · Proteins Structure Function and Bioinformatics · 2009 · 433 citations · Full text

, , +16

MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins

David T. Jones, Tanya Singh, Tomasz Kościółek et al. · Bioinformatics · 2014 · 383 citations · Full text

, , +14

1–5 of 125

Authors

358

  1. YZ
    Yang Zhang

    University of Michigan, United States

    9 publications · 1.5K citations

    9

    h-index

  2. DT
    David T. Jones

    University College London, United Kingdom

    9 publications · 1.7K citations

    9

    h-index

  3. CZ
    Chengxin Zhang

    University of Michigan, United States

    6 publications · 791 citations

    6

    h-index

  4. SO
    Sergey Ovchinnikov

    University of Washington, United States

    5 publications · 1.2K citations

    5

    h-index

  5. AE
    Arne Elofsson

    Stockholm University, Sweden

    5 publications · 336 citations

    5

    h-index

1–5 of 358

Institutions

202

  1. University College London

    London, United Kingdom

    11 h-index

    29 publications

    6.4K citations

  2. University of Michigan

    Ann Arbor, United States

    9 h-index

    32 publications

    4.2K citations

  3. Stockholm University

    Stockholm, Sweden

    6 h-index

    14 publications

    1.2K citations

  4. Science for Life Laboratory

    Stockholm, Sweden

    5 h-index

    13 publications

    1.1K citations

  5. Toyota Technological Institute at Chicago

    Chicago, United States

    5 h-index

    13 publications

    1.1K citations

  6. Columbia University

    New York, United States

    4 h-index

    13 publications

    546 citations

  7. University of Missouri

    Columbia, United States

    4 h-index

    7 publications

    439 citations

  8. Howard Hughes Medical Institute

    Chevy Chase, United States

    4 h-index

    8 publications

    2.4K citations

1–8 of 202

Venues

  1. Bioinformatics

    21 publications · 2.8K citations

    18

    h-index

  2. Proteins Structure Function and Bioinformatics

    19 publications · 1.9K citations

    16

    h-index

  3. BMC Bioinformatics

    11 publications · 666 citations

    11

    h-index

  4. PLoS Computational Biology

    7 publications · 381 citations

    7

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 6 publications · 1.5K citations

    6

    h-index

1–5