Concepedia

Rule-based Annotation

Rule-Based Annotation is a protein function annotation method that assigns functional attributes to proteins through predefined, logic-based rules derived from established biological knowledge, distinguishing it from statistical or machine learning approaches by its reliance on explicit, human-curated inference criteria.

47

Publications

3K

Citations

310

Authors

81

Institutions

Publications per year

2017–2026

11

Parents

Publications

47

RefSeq: an update on prokaryotic genome annotation and curation

Daniel H. Haft, Michael DiCuccio, Azat Badretdin et al. · Nucleic Acids Research · 2017 · 1K citations · Full text

, , +16

Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation

Dirk Woetzel, René Huber, Peter Kupfer et al. · Arthritis Research & Therapy · 2014 · 277 citations · Full text

, , +15

Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT

Akshay Smit, Saahil Jain, Pranav Rajpurkar et al. · 2020 · 223 citations · Full text

, , +14

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT

Ernst Kretschmann, Wolfgang Fleischmann, Rolf Apweiler · Bioinformatics · 2001 · 137 citations · Full text

, , +17

Domain Adaptation of Rule-Based Annotators for Named-Entity Recognition Tasks

Laura Chiticariu, Rajasekar Krishnamurthy, Yunyao Li et al. · 2010 · 126 citations

, , +15

1–5 of 47

Authors

310

  1. GY
    Gong-Xin Yu

    Argonne National Laboratory, United States

    2 publications · 28 citations

    2

    h-index

  2. SG
    Sébastien Géhant

    SIB Swiss Institute of Bioinformatics, Switzerland

    2 publications · 89 citations

    2

    h-index

  3. CW
    Cathy Wu

    Georgetown University, United States

    2 publications · 198 citations

    2

    h-index

  4. CH
    Chantal Hulo

    SIB Swiss Institute of Bioinformatics, Switzerland

    3 publications · 164 citations

    2

    h-index

  5. MP
    Matthew P. Lungren

    Stanford University, United States

    2 publications · 262 citations

    2

    h-index

1–5 of 310

Institutions

81

  1. European Bioinformatics Institute

    Cambridge, United Kingdom

    4 h-index

    35 publications

    2.6K citations

  2. Łukasiewicz Research Network - Institute of Innovative Technologies EMAG

    Katowice, Poland

    2 h-index

    3 publications

    33 citations

  3. Argonne National Laboratory

    Lemont, United States

    2 h-index

    5 publications

    58 citations

  4. Newcastle University

    Newcastle upon Tyne, United Kingdom

    2 h-index

    9 publications

    206 citations

  5. Georgetown University

    Washington, United States

    2 h-index

    13 publications

    1K citations

  6. Stanford University

    Stanford, United States

    2 h-index

    9 publications

    1.4K citations

  7. Silesian University of Technology

    Gliwice, Poland

    2 h-index

    5 publications

    55 citations

  8. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    2 h-index

    42 publications

    2.3K citations

1–8 of 81

Venues

  1. Bioinformatics

    6 publications · 330 citations

    6

    h-index

  2. BMC Bioinformatics

    3 publications · 92 citations

    3

    h-index

  3. Nucleic Acids Research

    2 publications · 1K citations

    2

    h-index

  4. Computer applications in the biosciences

    CABIOS · 1 publications · 123 citations

    1

    h-index

  5. 1

    h-index

1–5