Concepedia

Riboswitch Modeling

Riboswitch Modeling is a computational or mathematical framework that predicts the conformational dynamics and ligand-responsive behavior of riboswitches, a class of non-coding RNA elements regulating gene expression through structural rearrangements upon metabolite binding.

43

Publications

2.7K

Citations

150

Authors

72

Institutions

Publications per year

2017–2026

14

Parents

Publications

43

Riboswitch diversity and distribution

Phillip J. McCown, Keith A. Corbino, Shira Stav et al. · RNA · 2017 · 499 citations · Full text

, , +15

Automated physics-based design of synthetic riboswitches from diverse RNA aptamers

Amin Espah Borujeni, Dennis M. Mishler, Jingzhi Wang et al. · Nucleic Acids Research · 2015 · 281 citations · Full text

, , +17

Structural insights into amino acid binding and gene control by a lysine riboswitch

Alexander Serganov, Lili Huang, Dinshaw J. Patel · Nature · 2008 · 255 citations · Full text

, , +17

Effect of mutations on binding of ligands to guanine riboswitch probed by free energy perturbation and molecular dynamics simulations

Xingyu Wang, Laixue Pang, John Z. H. Zhang et al. · Nucleic Acids Research · 2019 · 180 citations · Full text

, , +16

A deep learning approach to programmable RNA switches

Nicolaas M. Angenent-Mari, Alexander S. Garruss, Luis R. Soenksen et al. · Nature Communications · 2020 · 148 citations · Full text

, , +14

1–5 of 43

Authors

150

  1. RD
    Rhiju Das

    Stanford University, United States

    5 publications · 236 citations

    5

    h-index

  2. WK
    Wipapat Kladwang

    Stanford University, United States

    4 publications · 208 citations

    4

    h-index

  3. KK
    Kalli Kappel

    Stanford University, United States

    2 publications · 58 citations

    2

    h-index

  4. BS
    Beatrix Suess

    Technische Universität Darmstadt, Germany

    2 publications · 84 citations

    2

    h-index

  5. SM
    Somdutt Mujwar

    Chitkara University, India

    2 publications · 69 citations

    2

    h-index

1–5 of 150

Institutions

72

  1. Stanford University

    Stanford, United States

    5 h-index

    17 publications

    818 citations

  2. University of Maryland, College Park

    College Park, United States

    3 h-index

    10 publications

    408 citations

  3. International Institute of Information Technology, Hyderabad

    Hyderabad, India

    2 h-index

    5 publications

    137 citations

  4. Memorial Sloan Kettering Cancer Center

    New York, United States

    2 h-index

    5 publications

    901 citations

  5. Boston College

    Boston, United States

    2 h-index

    4 publications

    110 citations

  6. University of Michigan

    Ann Arbor, United States

    2 h-index

    6 publications

    292 citations

  7. Technische Universität Darmstadt

    Darmstadt, Germany

    2 h-index

    11 publications

    483 citations

  8. New York University

    New York, United States

    2 h-index

    6 publications

    248 citations

1–8 of 72

Venues

  1. ACS Synthetic Biology

    4 publications · 153 citations

    4

    h-index

  2. Nucleic Acids Research

    3 publications · 483 citations

    3

    h-index

  3. Proceedings of the National Academy of Sciences

    PNAS · 3 publications · 166 citations

    3

    h-index

  4. PLoS Computational Biology

    3 publications · 210 citations

    3

    h-index

  5. Nature Communications

    2 publications · 245 citations

    2

    h-index

1–5