Concepedia

Riboswitch Dynamics

Riboswitch Dynamics is a computational framework that models the conformational changes and ligand-responsive structural transitions of riboswitch RNA elements in real time, enabling the prediction of gene regulatory outcomes based on dynamic RNA folding pathways.

99

Publications

5.1K

Citations

374

Authors

156

Institutions

Publications per year

2017–2026

43

Parents

Publications

99

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

J. Kenneth Wickiser, Wade C. Winkler, Ronald R. Breaker et al. · Molecular Cell · 2005 · 486 citations · Full text

, , +15

High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies

Michal Rabani, Raktima Raychowdhury, Marko Jovanović et al. · Cell · 2014 · 244 citations · Full text

, , +9

Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch

Nadia Kulshina, Nathan Baird, A.R. Ferré-D′Amaré · Nature Structural & Molecular Biology · 2009 · 197 citations

, , +6

Effect of mutations on binding of ligands to guanine riboswitch probed by free energy perturbation and molecular dynamics simulations

Xingyu Wang, Laixue Pang, John Z. H. Zhang et al. · Nucleic Acids Research · 2019 · 180 citations · Full text

, , +16

A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding 1 1Edited by I. Tinoco

Nina Pastor, Harel Weinstein, Elizabeth Jamison et al. · Journal of Molecular Biology · 2000 · 160 citations

, , +11

1–5 of 99

Authors

374

  1. NG
    Nils G. Walter

    University of Michigan, United States

    11 publications · 593 citations

    11

    h-index

  2. KC
    Krishna C. Suddala

    University of Michigan, United States

    6 publications · 274 citations

    6

    h-index

  3. HS
    Harald Schwalbe

    Goethe University Frankfurt, Germany

    6 publications · 225 citations

    6

    h-index

  4. AC
    Adrien Chauvier

    University of Michigan, United States

    5 publications · 243 citations

    5

    h-index

  5. JE
    Joseph E. Wedekind

    University of Rochester, United States

    4 publications · 165 citations

    4

    h-index

1–5 of 374

Institutions

156

  1. University of Michigan

    Ann Arbor, United States

    14 h-index

    49 publications

    2.5K citations

  2. Goethe University Frankfurt

    Frankfurt am Main, Germany

    10 h-index

    47 publications

    1.6K citations

  3. University of Colorado Boulder

    Boulder, United States

    6 h-index

    17 publications

    547 citations

  4. Czech Academy of Sciences, Institute of Biophysics

    Brno, Czechia

    4 h-index

    9 publications

    363 citations

  5. Howard Hughes Medical Institute

    Chevy Chase, United States

    4 h-index

    5 publications

    760 citations

  6. Analysis Group (United States)

    Boston, United States

    4 h-index

    14 publications

    578 citations

  7. National Institute of Standards and Technology

    Gaithersburg, United States

    3 h-index

    8 publications

    302 citations

  8. Palacký University Olomouc

    Olomouc, Czechia

    3 h-index

    9 publications

    441 citations

1–8 of 156

Venues

  1. Nucleic Acids Research

    10 publications · 504 citations

    10

    h-index

  2. Journal of the American Chemical Society

    JACS · 7 publications · 298 citations

    7

    h-index

  3. Journal of Molecular Biology

    JMB · 6 publications · 368 citations

    6

    h-index

  4. The Journal of Physical Chemistry B

    6 publications · 218 citations

    6

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 6 publications · 423 citations

    6

    h-index

1–5