Concepedia

Ribosome Occupancy Normalization

Ribosome Occupancy Normalization is a computational method used in ribosome profiling studies to standardize measurements of ribosome density across transcripts by accounting for technical and biological confounders such as transcript length, sequencing depth, and ribosomal drop-off rates.

5

Publications

407

Citations

24

Authors

18

Institutions

Publications per year

2017–2026

2

Parents

Publications

5

deltaTE: Detection of Translationally Regulated Genes by Integrative Analysis of Ribo‐seq and RNA‐seq Data

Sonia Chothani, Eleonora Adami, John F. Ouyang et al. · Current Protocols in Molecular Biology · 2019 · 169 citations · Full text

, , +14

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

Patrick B. F. O’Connor, Dmitry E. Andreev, Pavel V. Baranov · Nature Communications · 2016 · 113 citations · Full text

, , +13

Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling

Florian Aeschimann, Jieyi Xiong, Andreas Arnold et al. · Methods · 2015 · 57 citations

, , +12

SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data

Sang Y. Chun, Caitlin M. Rodriguez, Peter K. Todd et al. · BMC Bioinformatics · 2016 · 51 citations · Full text

, , +14

Accurate, Streamlined Analysis of mRNA Translation by Sucrose Gradient Fractionation

Soufiane Aboulhouda, Rachael Di Santo, Gabriel Thérizols et al. · BIO-PROTOCOL · 2017 · 17 citations

, , +15

1–5 of 5

Authors

24

  1. SA
    Soufiane Aboulhouda

    University of California, San Francisco, United States

    1 publications · 17 citations

    1

    h-index

  2. RE
    Ryan E. Mills

    University of Michigan, United States

    1 publications · 51 citations

    1

    h-index

  3. JF
    John F. Ouyang

    National University of Singapore, Singapore

    1 publications · 169 citations

    1

    h-index

  4. JX
    Jieyi Xiong

    Max Delbrück Center, Germany

    1 publications · 57 citations

    1

    h-index

  5. FA
    Florian Aeschimann

    Friedrich Miescher Institute, Switzerland

    1 publications · 57 citations

    1

    h-index

1–5 of 24

Institutions

18

  1. Max Planck Institute for Biology of Ageing

    Cologne, Germany

    1 h-index

    2 publications

    114 citations

  2. Veterans Health Administration

    Washington D.C., United States

    1 h-index

    1 publications

    51 citations

  3. Friedrich Miescher Institute

    Basel, Switzerland

    1 h-index

    3 publications

    171 citations

  4. University of Michigan

    Ann Arbor, United States

    1 h-index

    4 publications

    204 citations

  5. University of California, San Francisco

    San Francisco, United States

    1 h-index

    4 publications

    68 citations

  6. Hammersmith Hospital

    London, United Kingdom

    1 h-index

    1 publications

    169 citations

  7. Lomonosov Moscow State University

    Moscow, Russia

    1 h-index

    1 publications

    113 citations

  8. Imperial College London

    London, United Kingdom

    1 h-index

    1 publications

    169 citations

1–8 of 18

Venues

  1. Nature Communications

    1 publications · 113 citations

    1

    h-index

  2. BMC Bioinformatics

    1 publications · 51 citations

    1

    h-index

  3. Methods

    1 publications · 57 citations

    1

    h-index

  4. Current Protocols in Molecular Biology

    1 publications · 169 citations

    1

    h-index

  5. BIO-PROTOCOL

    1 publications · 17 citations

    1

    h-index

1–5