Concepedia

Reference-based Annotation

Reference-Based Annotation is a metagenomic annotation approach that assigns functional or taxonomic labels to sequencing reads by comparing them to curated reference databases, thereby leveraging existing genomic knowledge to infer biological roles or origins.

95

Publications

25.1K

Citations

706

Authors

232

Institutions

Publications per year

2017–2026

43

Parents

Publications

95

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Kim D. Pruitt, Tatiana Tatusova, D. R. Maglott · Nucleic Acids Research · 2006 · 4.7K citations · Full text

, , +16

GENCODE reference annotation for the human and mouse genomes

Adam Frankish, Mark Diekhans, Anne-Maud Ferreira et al. · Nucleic Acids Research · 2018 · 3.5K citations · Full text

, , +14

Ensembl 2022

Fiona Cunningham, James E. Allen, Jamie Allen et al. · Nucleic Acids Research · 2021 · 2.2K citations · Full text

, , +17

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Kim D. Pruitt · Nucleic Acids Research · 2004 · 1.7K citations · Full text

, , +17

Liftoff: accurate mapping of gene annotations

Alaina Shumate, Steven L. Salzberg · Bioinformatics · 2020 · 1.1K citations · Full text

, , +17

1–5 of 95

Authors

706

  1. AY
    Andrew Yates

    European Bioinformatics Institute, United Kingdom

    8 publications · 7.4K citations

    8

    h-index

  2. AF
    Adam Frankish

    Wellcome Sanger Institute, United Kingdom

    8 publications · 8.1K citations

    8

    h-index

  3. PF
    Paul Flicek

    European Bioinformatics Institute, United Kingdom

    6 publications · 6.4K citations

    6

    h-index

  4. JM
    Jonathan M. Mudge

    European Bioinformatics Institute, United Kingdom

    6 publications · 7.4K citations

    6

    h-index

  5. JL
    Jane Loveland

    European Bioinformatics Institute, United Kingdom

    6 publications · 7.4K citations

    6

    h-index

1–5 of 706

Institutions

232

  1. European Bioinformatics Institute

    Cambridge, United Kingdom

    13 h-index

    326 publications

    402.3K citations

  2. Wellcome Sanger Institute

    Cambridge, United Kingdom

    10 h-index

    28 publications

    5.9K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    8 h-index

    25 publications

    651 citations

  4. National Center for Biotechnology Information

    Bethesda, United States

    7 h-index

    47 publications

    19.9K citations

  5. Universitat Pompeu Fabra

    Barcelona, Spain

    5 h-index

    6 publications

    5.5K citations

  6. Centre for Genomic Regulation

    Barcelona, Spain

    5 h-index

    44 publications

    26.9K citations

  7. Broad Institute

    Cambridge, United States

    5 h-index

    15 publications

    15K citations

  8. University of California, Santa Cruz

    Santa Cruz, United States

    5 h-index

    39 publications

    26.8K citations

1–8 of 232

Venues

  1. Nucleic Acids Research

    20 publications · 17K citations

    20

    h-index

  2. Bioinformatics

    5 publications · 2.4K citations

    5

    h-index

  3. BMC Genomics

    5 publications · 367 citations

    5

    h-index

  4. Genome biology

    4 publications · 830 citations

    4

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 74 citations

    4

    h-index

1–5