Concepedia

Ramachandran Plot Analysis

Ramachandran Plot Analysis is a structural bioinformatics method that graphically represents the sterically allowed regions of dihedral angle combinations in polypeptide backbones to evaluate the conformational feasibility of amino acid residues within a protein structure.

338

Publications

28.4K

Citations

1.2K

Authors

456

Institutions

Publications per year

2017–2026

75

Parents

Publications

338

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ<sub>1</sub> and χ<sub>2</sub> Dihedral Angles

Robert B. Best, Xiao Zhu, Jihyun Shim et al. · Journal of Chemical Theory and Computation · 2012 · 4.8K citations

, , +17

Structure validation by Cα geometry: ϕ,ψ and Cβ deviation

Simon C. Lovell, Ian Davis, W.B. Arendall et al. · Proteins Structure Function and Bioinformatics · 2003 · 4.6K citations

, , +17

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

Matthias Heinig, Dmitrij Frishman · Nucleic Acids Research · 2004 · 1.1K citations · Full text

, , +14

Peptoids: a modular approach to drug discovery.

Reyna J. Simon, Robert S. Kania, Ronald N. Zuckermann et al. · Proceedings of the National Academy of Sciences · 1992 · 941 citations

, , +17

A fresh look at the Ramachandran plot and the occurrence of standard structures in proteins

Scott A. Hollingsworth, P. Andrew Karplus · BioMolecular Concepts · 2010 · 416 citations · Full text

, , +14

1–5 of 338

Authors

1.2K

  1. AP
    András Perczel

    Eötvös Loránd University, Hungary

    11 publications · 411 citations

    11

    h-index

  2. IG
    Imre G. Csizmadia

    University of Toronto, Canada

    11 publications · 405 citations

    11

    h-index

  3. CR
    C. Ramakrishnan

    Indian Institute of Science Bangalore, India

    6 publications · 315 citations

    6

    h-index

  4. MA
    Michael A. McAllister

    University of North Texas, United States

    6 publications · 245 citations

    6

    h-index

  5. RS
    Reinhard Schweitzer‐Stenner

    Drexel University, United States

    6 publications · 256 citations

    6

    h-index

1–5 of 1.2K

Institutions

456

  1. Eötvös Loránd University

    Budapest, Hungary

    12 h-index

    28 publications

    1.1K citations

  2. University of Toronto

    Toronto, Canada

    11 h-index

    31 publications

    1.1K citations

  3. Indian Institute of Science Bangalore

    Bengaluru, India

    8 h-index

    26 publications

    1.5K citations

  4. Lawrence Berkeley National Laboratory

    Berkeley, United States

    7 h-index

    20 publications

    1.4K citations

  5. University of Oxford

    Oxford, United Kingdom

    7 h-index

    9 publications

    261 citations

  6. Drexel University

    Philadelphia, United States

    6 h-index

    19 publications

    1K citations

  7. Cornell University

    Ithaca, United States

    5 h-index

    15 publications

    487 citations

  8. King Saud University

    Riyadh, Saudi Arabia

    5 h-index

    15 publications

    325 citations

1–8 of 456

Venues

  1. Journal of the American Chemical Society

    JACS · 18 publications · 2.1K citations

    18

    h-index

  2. Proteins Structure Function and Bioinformatics

    19 publications · 5.6K citations

    15

    h-index

  3. The Journal of Physical Chemistry B

    19 publications · 621 citations

    15

    h-index

  4. Journal of Biomolecular Structure and Dynamics

    16 publications · 393 citations

    14

    h-index

  5. Biopolymers

    13 publications · 441 citations

    13

    h-index

1–5