Concepedia

Pseudotime Inference

Pseudotime Inference is a computational method in single-cell transcriptomics that reconstructs the temporal progression of cellular processes by ordering cells along a hypothetical trajectory based on their transcriptional profiles, thereby inferring dynamic changes in gene expression without requiring temporal measurements.

60

Publications

8.1K

Citations

298

Authors

151

Institutions

Publications per year

2017–2026

55

Parents

Publications

60

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Kelly Street, Davide Risso, Russell B. Fletcher et al. · BMC Genomics · 2018 · 3.4K citations · Full text

, , +17

Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression

Chenglong Xia, Jean Fan, George Emanuel et al. · Proceedings of the National Academy of Sciences · 2019 · 827 citations · Full text

, , +16

Dynamics of Gene Expression in Single Root Cells of <i>Arabidopsis thaliana</i>

Ken Jean-Baptiste, José L. McFaline‐Figueroa, Cristina M Alexandre et al. · The Plant Cell · 2019 · 437 citations · Full text

, , +17

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

Kelly Street, Davide Risso, Russell B. Fletcher et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 284 citations · Full text

, , +17

Identifying multicellular spatiotemporal organization of cells with SpaceFlow

Honglei Ren, Benjamin L. Walker, Zixuan Cang et al. · Nature Communications · 2022 · 217 citations · Full text

, , +17

1–5 of 60

Authors

298

  1. CY
    Christopher Yau

    University of Oxford, United Kingdom

    5 publications · 325 citations

    5

    h-index

  2. KR
    Kieran R. Campbell

    University of Oxford, United Kingdom

    5 publications · 325 citations

    5

    h-index

  3. HJ
    Hongkai Ji

    Johns Hopkins University, United States

    2 publications · 111 citations

    2

    h-index

  4. AK
    Anna Klimovskaia

    European X-Ray Free-Electron Laser, Germany

    2 publications · 101 citations

    2

    h-index

  5. DR
    Davide Risso

    University of California, Berkeley, United States

    2 publications · 3.7K citations

    2

    h-index

1–5 of 298

Institutions

151

  1. Sun Yat-sen University

    Guangzhou, China

    5 h-index

    28 publications

    655 citations

  2. Centre for Human Genetics

    Oxford, United Kingdom

    5 h-index

    9 publications

    628 citations

  3. University of Oxford

    Oxford, United Kingdom

    5 h-index

    10 publications

    650 citations

  4. University of Cambridge

    Cambridge, United Kingdom

    4 h-index

    7 publications

    302 citations

  5. Harvard University

    Cambridge, United States

    4 h-index

    21 publications

    5K citations

  6. University of Birmingham

    Birmingham, United Kingdom

    3 h-index

    3 publications

    224 citations

  7. University of California, Irvine

    Irvine, United States

    2 h-index

    4 publications

    685 citations

  8. Parker Institute for Cancer Immunotherapy

    San Francisco, United States

    2 h-index

    4 publications

    222 citations

1–8 of 151

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 505 citations

    8

    h-index

  2. Bioinformatics

    8 publications · 654 citations

    8

    h-index

  3. Nature Communications

    7 publications · 802 citations

    7

    h-index

  4. BMC Bioinformatics

    3 publications · 118 citations

    3

    h-index

  5. PLoS Computational Biology

    4 publications · 142 citations

    3

    h-index

1–5