Concepedia

Protein Identification Algorithms

Protein Identification Algorithms is a computational methodology within bioinformatics that systematically distinguishes amino acid sequences from mass spectrometry data by matching experimental spectra to theoretical or empirical protein databases through probabilistic, machine learning, or combinatorial optimization techniques.

538

Publications

65.3K

Citations

2.2K

Authors

789

Institutions

Publications per year

2017–2026

141

Parents

Publications

538

Probability-based protein identification by searching sequence databases using mass spectrometry data

David N. Perkins, Darryl Pappin, David M. Creasy et al. · Electrophoresis · 1999 · 8.3K citations

, , +17

Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search

Andrew Keller, Alexey I. Nesvizhskii, Eugene Kolker et al. · Analytical Chemistry · 2002 · 5K citations

, , +17

A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry

Alexey I. Nesvizhskii, Andrew Keller, Eugene Kolker et al. · Analytical Chemistry · 2003 · 5K citations

, , +17

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

Joshua E. Elias, Steven P. Gygi · Nature Methods · 2007 · 4.1K citations

, , +16

SignalP 6.0 predicts all five types of signal peptides using protein language models

Nature Biotechnology · 2022 · 2.8K citations · Full text

, , +17

1–5 of 538

Authors

2.2K

  1. JR
    John R. Yates

    Scripps Research Institute, United States

    11 publications · 1.1K citations

    11

    h-index

  2. MH
    Maqsood Hayat

    Abdul Wali Khan University Mardan, Pakistan

    10 publications · 837 citations

    10

    h-index

  3. QZ
    Quan Zou

    University of Electronic Science and Technology of China, China

    10 publications · 966 citations

    10

    h-index

  4. HL
    Hao Lin

    University of Electronic Science and Technology of China, China

    10 publications · 1.1K citations

    10

    h-index

  5. DF
    David Fenyö

    New York University, United States

    9 publications · 1.1K citations

    9

    h-index

1–5 of 2.2K

Institutions

789

  1. University of Electronic Science and Technology of China

    Chengdu, China

    21 h-index

    62 publications

    6.5K citations

  2. University of Washington

    Seattle, United States

    12 h-index

    44 publications

    6.1K citations

  3. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    10 h-index

    26 publications

    2.2K citations

  4. European Bioinformatics Institute

    Cambridge, United Kingdom

    10 h-index

    25 publications

    5.7K citations

  5. Inner Mongolia University

    Hohhot, China

    9 h-index

    32 publications

    1.4K citations

  6. Abdul Wali Khan University Mardan

    Mardan, Pakistan

    9 h-index

    28 publications

    1.9K citations

  7. Scripps Research Institute

    San Diego, United States

    9 h-index

    35 publications

    2.8K citations

  8. Harbin Institute of Technology

    Harbin, China

    9 h-index

    23 publications

    2.4K citations

1–8 of 789

Venues

  1. Journal of Proteome Research

    JPR · 49 publications · 4.5K citations

    33

    h-index

  2. PROTEOMICS

    37 publications · 3.9K citations

    27

    h-index

  3. BMC Bioinformatics

    22 publications · 1K citations

    17

    h-index

  4. Bioinformatics

    18 publications · 1.4K citations

    15

    h-index

  5. Analytical Chemistry

    16 publications · 11.7K citations

    15

    h-index

1–5