Concepedia

Protein Dynamics Modeling

Protein Dynamics Modeling is a computational approach that belongs to the class of protein structure-function analysis methods, specifically characterized by its focus on simulating and predicting the time-dependent conformational changes and internal motions of proteins to understand their functional mechanisms, particularly in the context of allosteric regulation.

440

Publications

32.7K

Citations

1.4K

Authors

593

Institutions

Publications per year

2017–2026

125

Parents

Publications

440

Algorithms for macromolecular dynamics and constraint dynamics

Wilfred F. van Gunsteren, Herman J. C. Berendsen · Molecular Physics · 1977 · 1.7K citations

, , +17

Anisotropy of Fluctuation Dynamics of Proteins with an Elastic Network Model

Stewart R. Durell, Robert L. Jernigan, Melik C. Demirel et al. · Biophysical Journal · 2001 · 1.7K citations · Full text

, , +14

Principal Component Analysis: A Method for Determining the Essential Dynamics of Proteins

Charles David, Donald J. Jacobs · Methods in molecular biology · 2013 · 1.2K citations

, , +14

<i>ProDy</i>: Protein Dynamics Inferred from Theory and Experiments

Ahmet Bakan, Lidio Meireles, İvet Bahar · Bioinformatics · 2011 · 1.2K citations · Full text

, , +17

<i>TLSMD</i>web server for the generation of multi-group TLS models

Jay Painter, E.A. Merritt · Journal of Applied Crystallography · 2006 · 775 citations

, , +13

1–5 of 440

Authors

1.4K

  1. İB
    İvet Bahar

    University of Pittsburgh, United States

    12 publications · 4.4K citations

    12

    h-index

  2. AK
    Andrzej Koliński

    University of Warsaw, Poland

    8 publications · 457 citations

    8

    h-index

  3. GS
    Guang Song

    Iowa State University, United States

    7 publications · 245 citations

    7

    h-index

  4. JA
    J. Andrew McCammon

    University of California San Diego, United States

    7 publications · 536 citations

    7

    h-index

  5. WF
    Wilfred F. van Gunsteren

    ETH Zurich, Switzerland

    6 publications · 2.2K citations

    6

    h-index

1–5 of 1.4K

Institutions

593

  1. University of Pittsburgh

    Pittsburgh, United States

    13 h-index

    44 publications

    8.2K citations

  2. University of California San Diego

    San Diego, United States

    12 h-index

    26 publications

    1.3K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    11 h-index

    30 publications

    1.2K citations

  4. Inserm

    Paris, France

    10 h-index

    31 publications

    1.6K citations

  5. Iowa State University

    Ames, United States

    10 h-index

    22 publications

    640 citations

  6. Max Planck Institute for Biophysical Chemistry

    Göttingen, Germany

    9 h-index

    20 publications

    1.7K citations

  7. University of Warsaw

    Warsaw, Poland

    8 h-index

    19 publications

    1.5K citations

  8. Rice University

    Houston, United States

    7 h-index

    19 publications

    1.2K citations

1–8 of 593

Venues

  1. Biophysical Journal

    26 publications · 4K citations

    19

    h-index

  2. Proteins Structure Function and Bioinformatics

    24 publications · 1.2K citations

    18

    h-index

  3. Journal of Molecular Biology

    JMB · 13 publications · 1.4K citations

    13

    h-index

  4. The Journal of Chemical Physics

    12 publications · 593 citations

    12

    h-index

  5. PLoS Computational Biology

    12 publications · 639 citations

    12

    h-index

1–5