Concepedia

Profile-based Searching

Profile-Based Searching is a sequence similarity search method that uses a position-specific scoring model derived from a multiple sequence alignment to detect distantly related homologs by capturing conserved and variable regions across evolutionarily related sequences.

57

Publications

18.5K

Citations

196

Authors

101

Institutions

Publications per year

2017–2026

7

Variants

Profile-based Sequence Searching

Parents

Publications

57

HMMER web server: interactive sequence similarity searching

ROBERT FINN, Jody Clements, Sean R. Eddy · Nucleic Acids Research · 2011 · 6.4K citations · Full text

, , +16

Infernal 1.1: 100-fold faster RNA homology searches

Eric P. Nawrocki, Sean R. Eddy · Bioinformatics · 2013 · 3.9K citations · Full text

, , +16

HMMER web server: 2018 update

Simon Potter, Aurélien Luciani, Sean R. Eddy et al. · Nucleic Acids Research · 2018 · 2.8K citations · Full text

, , +16

MATCHTM: a tool for searching transcription factor binding sites in DNA sequences

Alexander Kel · Nucleic Acids Research · 2003 · 1.1K citations · Full text

, , +15

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes

Ritu Pandey · Nucleic Acids Research · 2002 · 789 citations · Full text

, , +17

1–5 of 57

Authors

196

  1. SR
    Sean R. Eddy

    Howard Hughes Medical Institute, United States

    3 publications · 13.1K citations

    3

    h-index

  2. RF
    ROBERT FINN

    European Bioinformatics Institute, United Kingdom

    3 publications · 9.3K citations

    3

    h-index

  3. JS
    Johannes Söding

    Max Planck Institute for Biophysical Chemistry, Germany

    3 publications · 505 citations

    3

    h-index

  4. NS
    Narayanaswamy Srinivasan

    Indian Institute of Science Bangalore, India

    2 publications · 35 citations

    2

    h-index

  5. DZ
    Di Zou

    Education University of Hong Kong, Hong Kong SAR China

    2 publications · 94 citations

    2

    h-index

1–5 of 196

Institutions

101

  1. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    8 publications

    949 citations

  2. University College London

    London, United Kingdom

    2 h-index

    8 publications

    488 citations

  3. Centre d’Immunologie de Marseille-Luminy

    Marseille, France

    2 h-index

    4 publications

    343 citations

  4. Howard Hughes Medical Institute

    Chevy Chase, United States

    2 h-index

    5 publications

    2.9K citations

  5. Education University of Hong Kong

    Tai Po, Hong Kong

    2 h-index

    5 publications

    226 citations

  6. Janelia Research Campus

    Ashburn, United States

    2 h-index

    5 publications

    27K citations

  7. Inserm

    Paris, France

    2 h-index

    5 publications

    434 citations

  8. Rutgers, The State University of New Jersey

    New Brunswick, United States

    2 h-index

    2 publications

    160 citations

1–8 of 101

Venues

  1. Bioinformatics

    11 publications · 4.3K citations

    11

    h-index

  2. Nucleic Acids Research

    10 publications · 11.4K citations

    10

    h-index

  3. 3

    h-index

  4. Computer applications in the biosciences

    CABIOS · 2 publications · 343 citations

    2

    h-index

  5. BMC Genomics

    2 publications · 163 citations

    2

    h-index

1–5