Concepedia

Polyploid Assembly

Polyploid Assembly is a computational method in genome assembly that reconstructs highly heterozygous, polyploid genomes from sequencing reads by resolving allelic variation and haplotype structure through specialized graph-based algorithms, distinguishing it from diploid or haploid assembly approaches.

27

Publications

1.8K

Citations

219

Authors

95

Institutions

Publications per year

2017–2026

17

Parents

Publications

27

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Xingtan Zhang, Shengcheng Zhang, Qian Zhao et al. · Nature Plants · 2019 · 665 citations

, , +14

The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids

Eric Lyons, Brent S. Pedersen, Josh Kane et al. · Tropical Plant Biology · 2008 · 227 citations

, , +14

Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph

Haoyu Cheng, Mobin Asri, Julian Lucas et al. · Nature Methods · 2024 · 182 citations · Full text

, , +16

Haplotype threading: accurate polyploid phasing from long reads

Sven Schrinner, Rebecca Serra Mari, Jana Ebler et al. · Genome biology · 2020 · 95 citations · Full text

, , +17

Blueprint for Phasing and Assembling the Genomes of Heterozygous Polyploids: Application to the Octoploid Genome of Strawberry

Michael A. Hardigan, Mitchell J. Feldmann, Dominique D. A. Pincot et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2021 · 74 citations · Full text

, , +17

1–5 of 27

Authors

219

  1. SS
    Sven Schrinner

    Forschungszentrum Jülich, Germany

    3 publications · 141 citations

    3

    h-index

  2. RS
    Rebecca Serra Mari

    Heinrich Heine University Düsseldorf, Germany

    3 publications · 141 citations

    3

    h-index

  3. GW
    Gunnar W. Klau

    Centrum Wiskunde & Informatica, Netherlands

    3 publications · 141 citations

    3

    h-index

  4. BU
    Björn Usadel

    Forschungszentrum Jülich, Germany

    3 publications · 141 citations

    3

    h-index

  5. TM
    Tobias Marschall

    Heinrich Heine University Düsseldorf, Germany

    3 publications · 141 citations

    3

    h-index

1–5 of 219

Institutions

95

  1. Forschungszentrum Jülich

    Jülich, Germany

    3 h-index

    5 publications

    197 citations

  2. Cluster of Excellence on Plant Sciences

    Düsseldorf, Germany

    3 h-index

    8 publications

    338 citations

  3. Heinrich Heine University Düsseldorf

    Düsseldorf, Germany

    3 h-index

    16 publications

    820 citations

  4. Max Planck Institute for Informatics

    Saarbrücken, Germany

    2 h-index

    5 publications

    244 citations

  5. North Carolina State University

    Raleigh, United States

    2 h-index

    5 publications

    90 citations

  6. Clemson University

    Clemson, United States

    2 h-index

    2 publications

    103 citations

  7. The University of Melbourne

    Melbourne, Australia

    2 h-index

    3 publications

    69 citations

  8. Iowa State University

    Ames, United States

    2 h-index

    7 publications

    362 citations

1–8 of 95

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 110 citations

    3

    h-index

  2. BMC Genomics

    3 publications · 155 citations

    3

    h-index

  3. Bioinformatics

    2 publications · 40 citations

    2

    h-index

  4. Genome biology

    2 publications · 123 citations

    2

    h-index

  5. Nature Plants

    1 publications · 665 citations

    1

    h-index

1–5