Phylogenetics Publications

Publications in Phylogenetics

Explore the most influential research papers and scholarly works that have shaped Phylogenetics. Use the concept filter below to focus on a specific sub-area of research.

Phylogenetics

199.5K

Publications

10.7M

Citations

Showing yearly statistics from 2000-2026.

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	Year	Citations
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Naruya Saitou, M Nei Molecular Biology and Evolution BotanyGeneticsPhylogenetic AnalysisPhylogeneticsMolecular Ecology	1987	60.2K
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP Joseph Felsenstein Evolution BiologyBiodiversityPhylogeneticsMolecular EcologyBiogeography	1985	41K
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods Koichiro Tamura, Daniel G. Peterson, Nora Peterson, Molecular Biology and Evolution Maximum Parsimony MethodsComparative GenomicsGeneticsGenomicsPhylogenetic Analysis	2011	40.1K
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms Sudhir Kumar, Glen Stecher, Michael Li, Molecular Biology and Evolution Comparative GenomicsGeneticsGenomicsPhylogenetic AnalysisPhylogenetics	2018	37.2K
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Alexandros Stamatakis Bioinformatics Abstract MotivationGeneticsGenomicsPhylogenetic AnalysisPhylogenetics	2014	33.3K
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools Christian Quast, Elmar Pruesse, Pelin Yilmaz, Nucleic Acids Research Ribosomal RnaGeneticsGenomicsSequence AlignmentArchaea	2012	32.2K
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences Journal of Molecular Evolution BiologyPhylogeneticsMolecular EcologyComparative GenomicsGenetics	1980	29.4K
MrBayes 3: Bayesian phylogenetic inference under mixed models Fredrik Ronquist, John P. Huelsenbeck Bioinformatics BiologyPhylogeneticsMolecular EcologyNatural SciencesGenetics	2003	29.1K
Confidence Limits on Phylogenies: An Approach Using the Bootstrap Joseph Felsenstein Evolution BiologyPhylogeneticsMolecular EcologyNatural SciencesEvolutionary Biology	1985	19.3K
PHYLIP-Phylogeny inference package (Version 3.2) Joe Felsenstein Cladistics BiologyPhylogeneticsMolecular EcologyNatural SciencesEvolutionary Biology	1989	17.9K
ModelFinder: fast model selection for accurate phylogenetic estimates Subha Kalyaanamoorthy, Bùi Quang Minh, Thomas K. F. Wong, Nature Methods BiologyPhylogeneticsNatural SciencesEvolutionary BiologyComputational Biology	2017	17.4K
Evolutionary trees from DNA sequences: A maximum likelihood approach Joseph Felsenstein Journal of Molecular Evolution PhylogeneticsMolecular EcologyMedicineGeneticsEvolutionary Biology	1981	14.7K

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