Concepedia

Phased Assembly

Phased Assembly is a computational genomics method that reconstructs haplotype-resolved genome sequences by distinguishing allelic variation through the integration of long-read and short-read sequencing data to resolve diploid or polyploid genomes into their individual chromosome-level haplotypes.

61

Publications

12.7K

Citations

551

Authors

223

Institutions

Publications per year

2017–2026

56

Variants

Haplotype-resolved AssemblyHaplotype-resolved Genome Assembly

Parents

Publications

61

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

Nature Methods · 2021 · 5.5K citations · Full text

, , +11

Phased diploid genome assembly with single-molecule real-time sequencing

Chen-Shan Chin, Paul Peluso, Fritz J. Sedlazeck et al. · Nature Methods · 2016 · 2.2K citations · Full text

, , +13

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

Michael J. Roach, Simon A. Schmidt, Anthony R. Borneman · BMC Bioinformatics · 2018 · 1.3K citations · Full text

, , +17

quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

Yunzhi Lin, Chen Ye, Xingzhu Li et al. · Horticulture Research · 2023 · 288 citations · Full text

, , +17

<i>De novo</i> PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads

Jonas Korlach, Gregory Gedman, Sarah B. Kingan et al. · GigaScience · 2017 · 266 citations · Full text

, , +17

1–5 of 61

Authors

551

  1. TM
    Tobias Marschall

    Heinrich Heine University Düsseldorf, Germany

    7 publications · 657 citations

    7

    h-index

  2. PP
    Paul Peluso

    Pacific Biosciences (United States), United States

    7 publications · 2.6K citations

    7

    h-index

  3. FJ
    Fritz J. Sedlazeck

    Baylor College of Medicine, United States

    6 publications · 2.6K citations

    6

    h-index

  4. CC
    Chen-Shan Chin

    Pacific Biosciences (United States), United States

    6 publications · 2.9K citations

    6

    h-index

  5. EE
    Evan E. Eichler

    University of Washington, United States

    6 publications · 444 citations

    6

    h-index

1–5 of 551

Institutions

223

  1. Pacific Biosciences (United States)

    Menlo Park, United States

    11 h-index

    12 publications

    8.6K citations

  2. Howard Hughes Medical Institute

    Chevy Chase, United States

    9 h-index

    9 publications

    872 citations

  3. University of California, Santa Cruz

    Santa Cruz, United States

    8 h-index

    8 publications

    482 citations

  4. Heinrich Heine University Düsseldorf

    Düsseldorf, Germany

    8 h-index

    8 publications

    663 citations

  5. Johns Hopkins University

    Baltimore, United States

    7 h-index

    7 publications

    2.6K citations

  6. University of Washington

    Seattle, United States

    7 h-index

    7 publications

    460 citations

  7. University of California, Davis

    Davis, United States

    7 h-index

    7 publications

    2.7K citations

  8. Saarland University

    Saarbrücken, Germany

    6 h-index

    6 publications

    397 citations

1–8 of 223

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 13 publications · 371 citations

    13

    h-index

  2. Horticulture Research

    8 publications · 816 citations

    8

    h-index

  3. G3 Genes Genomes Genetics

    4 publications · 76 citations

    4

    h-index

  4. Bioinformatics

    3 publications · 89 citations

    3

    h-index

  5. DNA Research

    3 publications · 171 citations

    3

    h-index

1–5