Concepedia

Normal Mode Analysis

Normal Mode Analysis is a computational method in molecular biophysics and structural biology that identifies and characterizes the collective vibrational motions of a macromolecular system by diagonalizing its Hessian matrix of second energy derivatives with respect to atomic coordinates under a harmonic approximation.

2K

Publications

109.9K

Citations

4K

Authors

1.3K

Institutions

Publications per year

2017–2026

352

Parents

Publications

2K

AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules

David A. Pearlman, David A. Case, James W. Caldwell et al. · Computer Physics Communications · 1995 · 3.1K citations

, , +17

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

Monique M. Tirion · Physical Review Letters · 1996 · 1.7K citations

, , +17

<i>ATSAS 2.8</i>: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions

Daniel Franke, Maxim V. Petoukhov, Petr V. Konarev et al. · Journal of Applied Crystallography · 2017 · 1.4K citations · Full text

, , +17

Quasinormal modes: the characteristic `sound' of black holes and neutron stars

Hans-Peter Nollert · Classical and Quantum Gravity · 1999 · 1.1K citations

, , +16

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

Toshiko Ichiye, Martin Karplus · Proteins Structure Function and Bioinformatics · 1991 · 1K citations

, , +13

1–5 of 2K

Authors

4K

  1. MI
    Mohamed I. A. Othman

    Zagazig University, Egypt

    31 publications · 1.2K citations

    20

    h-index

  2. MI
    Mohamed I. A. Othman

    Zagazig University, Egypt

    31 publications · 941 citations

    20

    h-index

  3. NG
    Nobuhiro Gō

    Kyoto University, Japan

    19 publications · 1.7K citations

    19

    h-index

  4. SK
    S. Krimm

    University of Michigan, United States

    21 publications · 898 citations

    17

    h-index

  5. MK
    Martin Karplus

    Harvard University, United States

    16 publications · 3.7K citations

    16

    h-index

1–5 of 4K

Institutions

1.3K

  1. Centre National de la Recherche Scientifique

    Paris, France

    31 h-index

    188 publications

    9.3K citations

  2. University of Michigan

    Ann Arbor, United States

    28 h-index

    83 publications

    7.1K citations

  3. Zagazig University

    Zagazig, Egypt

    28 h-index

    129 publications

    4.4K citations

  4. Kyoto University

    Kyoto, Japan

    25 h-index

    79 publications

    5.3K citations

  5. University of California, Berkeley

    Berkeley, United States

    21 h-index

    64 publications

    5.9K citations

  6. Taif University

    Ta'if, Saudi Arabia

    20 h-index

    38 publications

    1.2K citations

  7. University of California San Diego

    San Diego, United States

    18 h-index

    41 publications

    2.9K citations

  8. Boston University

    Boston, United States

    18 h-index

    44 publications

    2.8K citations

1–8 of 1.3K

Venues

  1. The Journal of Chemical Physics

    195 publications · 13.7K citations

    62

    h-index

  2. The Journal of Physical Chemistry B

    59 publications · 2.5K citations

    31

    h-index

  3. Proteins Structure Function and Bioinformatics

    48 publications · 5.3K citations

    29

    h-index

  4. The Journal of the Acoustical Society of America

    JASA · 48 publications · 2K citations

    27

    h-index

  5. The Journal of Physical Chemistry A

    41 publications · 2.2K citations

    27

    h-index

1–5