Concepedia

Loop Ensemble Modeling

Loop Ensemble Modeling is a computational method in structural biology that predicts the conformational variability of protein loops by generating a set of plausible loop structures, thereby capturing the inherent flexibility and uncertainty in loop regions beyond a single static model.

12

Publications

458

Citations

30

Authors

17

Institutions

Publications per year

2017–2026

2

Parents

Publications

12

Predicting antibody hypervariable loop conformation. I. Ensembles of random conformations for ringlike structures

Peter S. Shenkin, David L. Yarmush, Richard Fine et al. · Biopolymers · 1987 · 250 citations

, , +17

Molecular dynamics analysis of a flexible loop at the binding interface of the <scp>SARS‐CoV</scp> ‐2 spike protein <scp>receptor‐binding</scp> domain

Jonathan K. Williams, Baifan Wang, Andrew Sam et al. · Proteins Structure Function and Bioinformatics · 2021 · 46 citations · Full text

, , +17

Conformal Invariance of Boundary Touching Loops of FK Ising Model

Antti Kemppainen, Stanislav Smirnov · Communications in Mathematical Physics · 2019 · 31 citations · Full text

, , +11

Conformal invariance in random cluster models. II. Full scaling limit as a branching SLE

Antti Kemppainen, Stanislav Smirnov · arXiv (Cornell University) · 2016 · 22 citations · Full text

, , +11

Conformational Sampling of Flexible Ligand-binding Protein Loops

Gyu Rie Lee, Woong‐Hee Shin, Hahnbeom Park et al. · Bulletin of the Korean Chemical Society · 2012 · 16 citations · Full text

, , +16

1–5 of 12

Authors

30

  1. AK
    Antti Kemppainen

    University of Geneva, Switzerland

    2 publications · 53 citations

    2

    h-index

  2. SS
    Stanislav Smirnov

    University of Geneva, Switzerland

    2 publications · 53 citations

    2

    h-index

  3. RF
    Richard Fine

    BioPredict (United States), United States

    1 publications · 250 citations

    1

    h-index

  4. CS
    Chaok Seok

    Seoul National University, South Korea

    1 publications · 16 citations

    1

    h-index

  5. TW
    Teruaki Watabe

    The University of Tokyo, Japan

    1 publications · 11 citations

    1

    h-index

1–5 of 30

Institutions

17

  1. Massachusetts Institute of Technology

    Cambridge, United States

    2 h-index

    4 publications

    56 citations

  2. Microsoft (United States)

    Redmond, United States

    2 h-index

    4 publications

    56 citations

  3. University of Minnesota

    Minneapolis, United States

    1 h-index

    1 publications

    12 citations

  4. St Petersburg University

    Saint Petersburg, Russia

    1 h-index

    1 publications

    31 citations

  5. Kōchi University

    Kochi, Japan

    1 h-index

    3 publications

    33 citations

  6. Purdue University West Lafayette

    West Lafayette, United States

    1 h-index

    2 publications

    28 citations

  7. Winona State University

    Winona, United States

    1 h-index

    1 publications

    12 citations

  8. Quantitative BioSciences

    Solana Beach, United States

    1 h-index

    1 publications

    46 citations

1–8 of 17

Venues

  1. 2

    h-index

  2. Biopolymers

    1 publications · 250 citations

    1

    h-index

  3. Genetics

    1 publications · 11 citations

    1

    h-index

  4. Journal of the Mathematical Society of Japan

    1 publications · 16 citations

    1

    h-index

  5. Probability Theory and Related Fields

    1 publications · 13 citations

    1

    h-index

1–5