Concepedia

Loop Conformation Prediction

Loop Conformation Prediction is a computational method in structural bioinformatics that specifically addresses the prediction of the three-dimensional geometry of solvent-exposed polypeptide segments in proteins by modeling their conformational states based on sequence and structural constraints.

129

Publications

10.7K

Citations

384

Authors

198

Institutions

Publications per year

2017–2026

17

Parents

Publications

129

Modeling of loops in protein structures

András Fiser, Richard Kinh Gian, Andrej Šali · Protein Science · 2000 · 2.2K citations · Full text

, , +17

SAbDab: the structural antibody database

James B. Dunbar, Konrad Krawczyk, Jinwoo Leem et al. · Nucleic Acids Research · 2013 · 727 citations · Full text

, , +11

A New Clustering of Antibody CDR Loop Conformations

Benjamin North, Andreas Lehmann, Roland L. Dunbrack · Journal of Molecular Biology · 2010 · 402 citations

, , +14

Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction

Zhexin Xiang, Cinque Soto, Barry Honig · Proceedings of the National Academy of Sciences · 2002 · 368 citations · Full text

, , +17

Modeling structurally variable regions in homologous proteins with rosetta

Carol A. Rohl, Charlie E. M. Strauss, Dylan Chivian et al. · Proteins Structure Function and Bioinformatics · 2004 · 328 citations

, , +17

1–5 of 129

Authors

384

  1. RA
    Richard A. Friesner

    Columbia University, United States

    6 publications · 411 citations

    6

    h-index

  2. KZ
    Kai Zhu

    Schrodinger (United States), United States

    4 publications · 217 citations

    4

    h-index

  3. CM
    Charlotte M. Deane

    University of Oxford, United Kingdom

    4 publications · 820 citations

    4

    h-index

  4. HP
    Hahnbeom Park

    University of Washington, United States

    3 publications · 229 citations

    3

    h-index

  5. CD
    Charles DeLisi

    Boston University, United States

    3 publications · 138 citations

    3

    h-index

1–5 of 384

Institutions

198

  1. Columbia University

    New York, United States

    12 h-index

    40 publications

    5.5K citations

  2. Université Paris Cité

    Paris, France

    6 h-index

    18 publications

    712 citations

  3. Icahn School of Medicine at Mount Sinai

    New York, United States

    4 h-index

    13 publications

    408 citations

  4. Howard Hughes Medical Institute

    Chevy Chase, United States

    4 h-index

    11 publications

    2.5K citations

  5. Inserm

    Paris, France

    4 h-index

    13 publications

    450 citations

  6. Johns Hopkins University

    Baltimore, United States

    4 h-index

    11 publications

    1.2K citations

  7. Seoul National University

    Seoul, South Korea

    4 h-index

    16 publications

    1.1K citations

  8. Birkbeck, University of London

    London, United Kingdom

    4 h-index

    12 publications

    1.2K citations

1–8 of 198

Venues

  1. Proteins Structure Function and Bioinformatics

    30 publications · 2K citations

    22

    h-index

  2. Journal of Biomolecular Structure and Dynamics

    7 publications · 232 citations

    7

    h-index

  3. Journal of Molecular Biology

    JMB · 7 publications · 1.2K citations

    7

    h-index

  4. Protein Engineering Design and Selection

    PEDS · 7 publications · 301 citations

    7

    h-index

  5. Biopolymers

    6 publications · 526 citations

    6

    h-index

1–5