Concepedia

Local Sequence Context Effects

Local Sequence Context Effects is a biochemical determinant that refers to the influence of neighboring amino acid residues on the functional or structural behavior of a specific residue within a protein sequence, distinguished by its dependence on spatially proximal sequence elements rather than global structural features.

421

Publications

27.7K

Citations

1.7K

Authors

578

Institutions

Publications per year

2017–2026

95

Variants

Neighboring Residue Effects

Parents

Publications

421

SRAMP: prediction of mammalian N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) sites based on sequence-derived features

Yuan Zhou, Pan Zeng, Yanhui Li et al. · Nucleic Acids Research · 2016 · 1.2K citations · Full text

, , +15

Evaluation of next generation sequencing platforms for population targeted sequencing studies

Olivier Harismendy, Pauline C. Ng, Robert L. Strausberg et al. · Genome biology · 2009 · 624 citations · Full text

, , +15

Sequence-Dependent Correction of Random Coil NMR Chemical Shifts

Stephan Schwarzinger, Gerard Kroon, Ted R. Foss et al. · Journal of the American Chemical Society · 2001 · 614 citations

, , +12

Convolutional neural network architectures for predicting DNA–protein binding

Haoyang Zeng, Matthew D. Edwards, Ge Liu et al. · Bioinformatics · 2016 · 549 citations · Full text

, , +15

NetOglyc: Prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility

Jan Erik Hansen, Ole Lund, Niels Tolstrup et al. · Glycoconjugate Journal · 1998 · 517 citations

, , +15

1–5 of 421

Authors

1.7K

  1. NE
    Nicholas E. Geacintov

    New York University, United States

    8 publications · 347 citations

    8

    h-index

  2. JS
    Jay Shendure

    University of Washington, United States

    4 publications · 292 citations

    4

    h-index

  3. LJ
    Louis J. Romano

    Wayne State University, United States

    4 publications · 84 citations

    4

    h-index

  4. MW
    Martin Weigt

    Sorbonne Université, France

    3 publications · 335 citations

    3

    h-index

  5. PC
    Peter C. Dedon

    Massachusetts Institute of Technology, United States

    3 publications · 195 citations

    3

    h-index

1–5 of 1.7K

Institutions

578

  1. Massachusetts Institute of Technology

    Cambridge, United States

    15 h-index

    52 publications

    6.5K citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    11 h-index

    25 publications

    1.7K citations

  3. Harvard University

    Cambridge, United States

    11 h-index

    45 publications

    3K citations

  4. University of Washington

    Seattle, United States

    10 h-index

    43 publications

    2.9K citations

  5. Washington University in St. Louis

    St Louis, United States

    9 h-index

    30 publications

    2K citations

  6. Howard Hughes Medical Institute

    Chevy Chase, United States

    9 h-index

    19 publications

    1.8K citations

  7. New York University

    New York, United States

    8 h-index

    43 publications

    2K citations

  8. Chinese Academy of Sciences

    Beijing, China

    8 h-index

    23 publications

    1.1K citations

1–8 of 578

Venues

  1. Nucleic Acids Research

    69 publications · 5.6K citations

    37

    h-index

  2. Proceedings of the National Academy of Sciences

    PNAS · 23 publications · 3K citations

    23

    h-index

  3. Biochemistry

    34 publications · 1.1K citations

    21

    h-index

  4. Journal of Molecular Biology

    JMB · 16 publications · 1.1K citations

    16

    h-index

  5. Journal of Biological Chemistry

    JBC · 13 publications · 699 citations

    13

    h-index

1–5