Concepedia

K-mer-based Binning

K-Mer-Based Binning is a computational method in haplotype-resolved genome assembly that assigns sequencing reads to individual haplotypes by exploiting differences in k-mer composition as signatures of haplotype-specific sequences.

7

Publications

248

Citations

34

Authors

26

Institutions

Publications per year

2017–2026

7

Parents

Publications

7

Improving the performance of minimizers and winnowing schemes

Guillaume Marçais, David Pellow, Daniel Bork et al. · Bioinformatics · 2017 · 91 citations · Full text

, , +9

K-mer Content, Correlation, and Position Analysis of Genome DNA Sequences for the Identification of Function and Evolutionary Features

Aaron Sievers, Katharina Bosiek, Marc Bisch et al. · Genes · 2017 · 58 citations · Full text

, , +17

Optimal choice of k-mer in composition vector method for genome sequence comparison

Subhram Das, Tamal Deb, Nilanjan Dey et al. · Genomics · 2017 · 27 citations

, , +15

Compact and evenly distributed <i>k</i> -mer binning for genomic sequences

Johan Nyström-Persson, Gabriel Keeble‐Gagnère, Niamat Zawad · Bioinformatics · 2021 · 21 citations · Full text

, , +14

Recent Evolution of a Maternally Acting Sex-Determining Supergene in a Fly with Single-Sex Broods

Robert B Baird, John Urban, Andrew J. Mongue et al. · Molecular Biology and Evolution · 2023 · 19 citations · Full text

, , +13

1–5 of 7

Authors

34

  1. KS
    Kamil S. Jaroň

    University of Lausanne, Switzerland

    2 publications · 36 citations

    2

    h-index

  2. CN
    Christina N. Hodson

    University of Edinburgh, United Kingdom

    1 publications · 19 citations

    1

    h-index

  3. DC
    Dong‐Ho Cho

    Korea Advanced Institute of Science and Technology, South Korea

    1 publications · 15 citations

    1

    h-index

  4. DN
    D. N. Tibarewala

    Jadavpur University, India

    1 publications · 27 citations

    1

    h-index

  5. MH
    Michael Hausmann

    Heidelberg University, Germany

    1 publications · 58 citations

    1

    h-index

1–5 of 34

Institutions

26

  1. Carnegie Mellon University

    Pittsburgh, United States

    1 h-index

    3 publications

    273 citations

  2. Techno India University

    Kolkata, India

    1 h-index

    1 publications

    27 citations

  3. Agriculture Victoria

    Melbourne, Australia

    1 h-index

    1 publications

    21 citations

  4. University Medical Centre Mannheim

    Mannheim, Germany

    1 h-index

    1 publications

    58 citations

  5. Wellcome Sanger Institute

    Cambridge, United Kingdom

    1 h-index

    1 publications

    19 citations

  6. University of Edinburgh

    Edinburgh, United Kingdom

    1 h-index

    4 publications

    76 citations

  7. University of Lausanne

    Lausanne, Switzerland

    1 h-index

    1 publications

    17 citations

  8. Tel Aviv University

    Tel Aviv, Israel

    1 h-index

    2 publications

    182 citations

1–8 of 26

Venues

  1. Bioinformatics

    2 publications · 112 citations

    2

    h-index

  2. Genomics

    2 publications · 42 citations

    2

    h-index

  3. Molecular Biology and Evolution

    MBE · 1 publications · 19 citations

    1

    h-index

  4. Genes

    1 publications · 58 citations

    1

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 17 citations

    1

    h-index

1–5