Concepedia

Homology-based Loop Modeling

Homology-Based Loop Modeling is a computational method in structural bioinformatics that predicts the conformation of protein loops by leveraging evolutionary and structural similarities to known loop templates derived from homologous protein sequences.

49

Publications

5.5K

Citations

198

Authors

85

Institutions

Publications per year

2017–2026

9

Parents

Publications

49

A hierarchical approach to all‐atom protein loop prediction

Matthew P. Jacobson, David L. Pincus, Chaya S. Rapp et al. · Proteins Structure Function and Bioinformatics · 2004 · 2.5K citations

, , +17

ProMod3—A versatile homology modelling toolbox

Gabriel Studer, Gerardo Tauriello, Stefan Bienert et al. · PLoS Computational Biology · 2021 · 287 citations · Full text

, , +15

Homology modeling a fast tool for drug discovery: Current perspectives

RD Ukawala, Chetan Chintha, Manjunath Ghate · Indian Journal of Pharmaceutical Sciences · 2012 · 261 citations

, , +17

Structural Families in Loops of Homologous Proteins: Automatic Classification, Modelling and Application to Antibodies

Andrew C.R. Martin, Janet M. Thornton · Journal of Molecular Biology · 1996 · 247 citations

, , +16

Antibody structure determination using a combination of homology modeling, energy‐based refinement, and loop prediction

Kai Zhu, Tyler Day, Dora Toledo Warshaviak et al. · Proteins Structure Function and Bioinformatics · 2014 · 247 citations · Full text

, , +16

1–5 of 49

Authors

198

  1. JJ
    Jeffrey J. Gray

    Johns Hopkins University, United States

    3 publications · 254 citations

    3

    h-index

  2. PT
    Pierre Tufféry

    Université Paris Cité, France

    3 publications · 179 citations

    3

    h-index

  3. RA
    Richard A. Friesner

    Columbia University, United States

    3 publications · 2.8K citations

    3

    h-index

  4. DS
    Dietmar Schomburg

    Technische Universität Braunschweig, Germany

    3 publications · 57 citations

    3

    h-index

  5. GW
    Gerd Wohlfahrt

    Orion Corporation (Finland), Finland

    2 publications · 27 citations

    2

    h-index

1–5 of 198

Institutions

85

  1. Inserm

    Paris, France

    3 h-index

    11 publications

    516 citations

  2. University of Cologne

    Cologne, Germany

    3 h-index

    8 publications

    141 citations

  3. Johns Hopkins University

    Baltimore, United States

    3 h-index

    9 publications

    898 citations

  4. Schrodinger (United States)

    New York, United States

    3 h-index

    8 publications

    6.1K citations

  5. Columbia University

    New York, United States

    3 h-index

    7 publications

    8.1K citations

  6. Université Paris Cité

    Paris, France

    3 h-index

    11 publications

    516 citations

  7. Bristol-Myers Squibb (United States)

    New York, United States

    2 h-index

    4 publications

    62 citations

  8. Sorbonne Paris Cité

    Paris, France

    2 h-index

    9 publications

    381 citations

1–8 of 85

Venues

  1. Proteins Structure Function and Bioinformatics

    11 publications · 3.2K citations

    11

    h-index

  2. Nucleic Acids Research

    4 publications · 242 citations

    4

    h-index

  3. Journal of Biological Chemistry

    JBC · 3 publications · 135 citations

    3

    h-index

  4. Biochemistry

    2 publications · 58 citations

    2

    h-index

  5. Bioscience Biotechnology and Biochemistry

    2 publications · 52 citations

    2

    h-index

1–5