Concepedia

Genome-wide Pausing Profiling

Genome-Wide Pausing Profiling is a genomic analysis method that identifies and quantifies the positional and temporal stalling of RNA polymerase II across an entire genome to characterize transcriptional pausing dynamics at single-gene resolution.

6

Publications

2.2K

Citations

36

Authors

16

Institutions

Publications per year

2017–2026

3

Parents

Publications

6

Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

Leighton J. Core, Joshua J. Waterfall, John T. Lis · Science · 2008 · 2.1K citations · Full text

, , +17

Control of VEGF-A transcriptional programs by pausing and genomic compartmentalization

Minna U. Kaikkonen, Henri Niskanen, Casey E. Romanoski et al. · Nucleic Acids Research · 2014 · 45 citations · Full text

, , +17

The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach

Jun Odawara, Akihito Harada, Tomohiko Yoshimi et al. · BMC Genomics · 2011 · 41 citations · Full text

, , +15

Transcriptome-Wide Effects of NusA on RNA Polymerase Pausing in Bacillus subtilis

Oshadhi T. Jayasinghe, Zachary F. Mandell, Alexander V. Yakhnin et al. · Journal of Bacteriology · 2022 · 26 citations · Full text

, , +14

Nascent RNA sequencing identifies a widespread sigma70-dependent pausing regulated by Gre factors in bacteria

Zhe Sun, Alexander V. Yakhnin, Peter Fitzgerald et al. · Nature Communications · 2021 · 21 citations · Full text

, , +17

1–5 of 6

Authors

36

  1. MK
    Mikhail Kashlev

    Center for Cancer Research, United States

    2 publications · 47 citations

    2

    h-index

  2. AV
    Alexander V. Yakhnin

    Pennsylvania State University, United States

    2 publications · 47 citations

    2

    h-index

  3. AS
    Adam Scheidegger

    University of North Dakota, United States

    1 publications · 11 citations

    1

    h-index

  4. LJ
    Leighton J. Core

    Cornell University, United States

    1 publications · 2.1K citations

    1

    h-index

  5. JT
    John T. Lis

    Cornell University, United States

    1 publications · 2.1K citations

    1

    h-index

1–5 of 36

Institutions

16

  1. Torrey Pines Institute For Molecular Studies

    San Diego, United States

    1 h-index

    1 publications

    45 citations

  2. Dana-Farber Cancer Institute

    Boston, United States

    1 h-index

    1 publications

    11 citations

  3. University of California, Merced

    Merced, United States

    1 h-index

    2 publications

    22 citations

  4. Osaka City University

    Osaka, Japan

    1 h-index

    2 publications

    82 citations

  5. University of North Dakota

    Grand Forks, United States

    1 h-index

    5 publications

    55 citations

  6. National Institutes of Health

    Bethesda, United States

    1 h-index

    5 publications

    105 citations

  7. Salk Institute for Biological Studies

    La Jolla, United States

    1 h-index

    1 publications

    45 citations

  8. Pennsylvania State University

    State College, United States

    1 h-index

    3 publications

    78 citations

1–8 of 16

Venues

  1. BMC Genomics

    2 publications · 52 citations

    2

    h-index

  2. Science

    1 publications · 2.1K citations

    1

    h-index

  3. Journal of Bacteriology

    JB · 1 publications · 26 citations

    1

    h-index

  4. Nucleic Acids Research

    1 publications · 45 citations

    1

    h-index

  5. Nature Communications

    1 publications · 21 citations

    1

    h-index

1–5