Concepedia

Gene Interaction Representation

Gene Interaction Representation is a knowledge representation framework that formally models the functional, regulatory, and physical relationships between genes within biological systems, distinguishing itself from general interaction paradigms by its specific focus on gene-level mechanistic dependencies and contextual molecular semantics.

17

Publications

701

Citations

65

Authors

49

Institutions

Publications per year

2017–2026

9

Parents

Publications

17

GCNG: graph convolutional networks for inferring gene interaction from spatial transcriptomics data

Ye Yuan, Ziv Bar‐Joseph · Genome biology · 2020 · 196 citations · Full text

, , +16

Dual-dropout graph convolutional network for predicting synthetic lethality in human cancers

Ruichu Cai, Chen XueXin, Yuan Fang et al. · Bioinformatics · 2020 · 101 citations · Full text

, , +15

GNE: a deep learning framework for gene network inference by aggregating biological information

Kishan KC, Rui Li, Feng Cui et al. · BMC Systems Biology · 2019 · 87 citations · Full text

, , +14

Visualizing Gene Interaction Graphs with Local Multidimensional Scaling

Jarkko Venna, Samuel Kaski · The European Symposium on Artificial Neural Networks · 2006 · 50 citations

, , +14

MODIG: integrating multi-omics and multi-dimensional gene network for cancer driver gene identification based on graph attention network model

Wenyi Zhao, Xun Gu, Shuqing Chen et al. · Bioinformatics · 2022 · 48 citations

, , +17

1–5 of 17

Authors

65

  1. RL
    Rui Li

    Air Force Engineering University, China

    2 publications · 104 citations

    2

    h-index

  2. AR
    Anne R. Haake

    Rochester Institute of Technology, United States

    2 publications · 104 citations

    2

    h-index

  3. FC
    Feng Cui

    Rochester Institute of Technology, United States

    2 publications · 104 citations

    2

    h-index

  4. SK
    Samuel Kaski

    Aalto University, Finland

    2 publications · 88 citations

    2

    h-index

  5. QY
    Qi Yu

    Rochester Institute of Technology, United States

    2 publications · 104 citations

    2

    h-index

1–5 of 65

Institutions

49

  1. Rochester Institute of Technology

    Rochester, United States

    2 h-index

    10 publications

    520 citations

  2. GREYC

    Caen, France

    1 h-index

    2 publications

    28 citations

  3. University of North Dakota

    Grand Forks, United States

    1 h-index

    1 publications

    12 citations

  4. Centre Inria de l'Université Grenoble Alpes

    Montbonnot-Saint-Martin, France

    1 h-index

    1 publications

    10 citations

  5. Iowa State University

    Ames, United States

    1 h-index

    1 publications

    48 citations

  6. Texas A&M University System

    College Station, United States

    1 h-index

    1 publications

    23 citations

  7. RIKEN Center for Brain Science

    Wako, Japan

    1 h-index

    1 publications

    13 citations

  8. University of Electronic Science and Technology of China

    Chengdu, China

    1 h-index

    1 publications

    13 citations

1–8 of 49

Venues

  1. Bioinformatics

    5 publications · 198 citations

    5

    h-index

  2. Genome biology

    1 publications · 196 citations

    1

    h-index

  3. BMC Microbiology

    1 publications · 23 citations

    1

    h-index

  4. BMC Systems Biology

    1 publications · 87 citations

    1

    h-index

  5. Journal of Biomedical Semantics

    JBMS · 1 publications · 14 citations

    1

    h-index

1–5