Concepedia

Expression-based Transcript Annotation

Expression-Based Transcript Annotation is a transcriptome annotation method that utilizes gene expression data to distinguish and refine transcript models by identifying transcriptionally active regions, thereby differentiating it from annotation approaches based solely on sequence or structural features.

26

Publications

1.6K

Citations

343

Authors

181

Institutions

Publications per year

2017–2026

9

Parents

Publications

26

Microarray Analysis of Rejection in Human Kidney Transplants Using Pathogenesis-Based Transcript Sets

Thomas Mueller, Gunilla Einecke, J. Reeve et al. · American Journal of Transplantation · 2007 · 214 citations · Full text

, , +17

Transcript expression-aware annotation improves rare variant interpretation

Beryl B. Cummings, Konrad J. Karczewski, Jack A. Kosmicki et al. · Nature · 2020 · 202 citations · Full text

, , +17

Full‐length <i>de novo</i> assembly of RNA‐seq data in pea (<i><scp>P</scp>isum sativum</i> L.) provides a gene expression atlas and gives insights into root nodulation in this species

Susete Alves‐Carvalho, Grégoire Aubert, Sébastien Carrère et al. · The Plant Journal · 2015 · 189 citations

, , +16

Identification of Differentially Expressed Transcripts from Maturing Stem of Sugarcane by in silico Analysis of Stem Expressed Sequence Tags and Gene Expression Profiling

Rosanne E. Casu, Christine M. Dimmock, Scott Chapman et al. · Plant Molecular Biology · 2004 · 154 citations

, , +16

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica

Neeraja M. Krishnan, Swetansu Pattnaik, Prachi Jain et al. · BMC Genomics · 2012 · 110 citations · Full text

, , +17

1–5 of 26

Authors

343

  1. JM
    Jonathan M. Mudge

    European Bioinformatics Institute, United Kingdom

    2 publications · 222 citations

    2

    h-index

  2. FK
    F. Kyle Satterstrom

    Harvard University, United States

    2 publications · 222 citations

    2

    h-index

  3. NA
    Nicholas A. Watts

    Massachusetts General Hospital, United States

    3 publications · 424 citations

    2

    h-index

  4. MS
    Matthew Solomonson

    Massachusetts General Hospital, United States

    3 publications · 424 citations

    2

    h-index

  5. GE
    Gunilla Einecke

    University of Alberta, Canada

    2 publications · 320 citations

    2

    h-index

1–5 of 343

Institutions

181

  1. European Bioinformatics Institute

    Cambridge, United Kingdom

    3 h-index

    4 publications

    445 citations

  2. University of Southern California

    Los Angeles, United States

    2 h-index

    7 publications

    674 citations

  3. Boston Children's Hospital

    Boston, United States

    2 h-index

    3 publications

    424 citations

  4. University of Alberta

    Edmonton, Canada

    2 h-index

    10 publications

    1.3K citations

  5. Cleveland Clinic Lerner College of Medicine

    Cleveland, United States

    2 h-index

    5 publications

    819 citations

  6. Genomics (United Kingdom)

    Oxford, United Kingdom

    2 h-index

    8 publications

    740 citations

  7. RIKEN Center for Integrative Medical Sciences

    Yokohama, Japan

    2 h-index

    12 publications

    276 citations

  8. Broad Institute

    Cambridge, United States

    2 h-index

    101 publications

    17.5K citations

1–8 of 181

Venues

  1. American Journal of Transplantation

    2 publications · 320 citations

    2

    h-index

  2. Nucleic Acids Research

    1 publications · 20 citations

    1

    h-index

  3. Development

    1 publications · 21 citations

    1

    h-index

  4. Korean Journal of Parasitology

    1 publications · 12 citations

    1

    h-index

  5. Journal of Natural Medicines

    1 publications · 91 citations

    1

    h-index

1–5