Concepedia

Energy-based Threading

Energy-Based Threading is a protein threading method that predicts protein structure by aligning a target sequence to a structural template through the minimization of an energy-like scoring function derived from pairwise inter-residue interactions.

11

Publications

799

Citations

33

Authors

21

Institutions

Publications per year

2017–2026

0

Parents

Publications

11

RAPTOR: OPTIMAL PROTEIN THREADING BY LINEAR PROGRAMMING

Jinbo Xu, Ming Li, Dongsup Kim et al. · Journal of Bioinformatics and Computational Biology · 2003 · 294 citations

, , +15

An iterative method for extracting energy-like quantities from protein structures.

Paul D. Thomas, Ken A. Dill · Proceedings of the National Academy of Sciences · 1996 · 258 citations

, , +15

PROSPECT II: protein structure prediction program for genome-scale applications

Dongwoo Kim, Dong Xu, Jingzhong Guo et al. · Protein Engineering Design and Selection · 2003 · 111 citations · Full text

, , +17

In search of the ideal protein sequence

Adam Godzik · Protein Engineering Design and Selection · 1995 · 28 citations

, , +15

Disulfide recognition in an optimized threading potential

Alan A. Dombkowski, Gordon M. Crippen · Protein Engineering Design and Selection · 2000 · 27 citations · Full text

, , +17

1–5 of 11

Authors

33

  1. YX
    Ying Xu

    University of Georgia, United States

    2 publications · 405 citations

    2

    h-index

  2. MS
    Mingfu Shao

    École Polytechnique Fédérale de Lausanne, Switzerland

    1 publications · 12 citations

    1

    h-index

  3. PC
    Pierre-Yves Calland

    École Normale Supérieure de Lyon, France

    1 publications · 14 citations

    1

    h-index

  4. MR
    Marcos R. Betancourt

    Indiana University – Purdue University Indianapolis, United States

    1 publications · 19 citations

    1

    h-index

  5. HN
    Haruki Nakamura

    Protein Research Foundation, Japan

    1 publications · 13 citations

    1

    h-index

1–5 of 33

Institutions

21

  1. Oak Ridge National Laboratory

    Oak Ridge, United States

    2 h-index

    7 publications

    1.1K citations

  2. Chinese Academy of Sciences

    Beijing, China

    1 h-index

    6 publications

    72 citations

  3. Rutgers, The State University of New Jersey

    New Brunswick, United States

    1 h-index

    2 publications

    20 citations

  4. Université Polytechnique Hauts-de-France

    Valenciennes, France

    1 h-index

    1 publications

    14 citations

  5. International Computer Science Institute

    Berkeley, United States

    1 h-index

    1 publications

    12 citations

  6. National Institute of Genetics

    Mishima, Japan

    1 h-index

    2 publications

    26 citations

  7. University of Michigan

    Ann Arbor, United States

    1 h-index

    2 publications

    54 citations

  8. University at Buffalo, State University of New York

    Buffalo, United States

    1 h-index

    1 publications

    19 citations

1–8 of 21

Venues

  1. Protein Engineering Design and Selection

    PEDS · 5 publications · 190 citations

    5

    h-index

  2. PubMed

    Repository · 1 publications · 13 citations

    1

    h-index

  3. 1

    h-index

  4. European Biophysics Journal

    1 publications · 13 citations

    1

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 1 publications · 258 citations

    1

    h-index

1–5