Concepedia

Dynamic Gap Penalty

Dynamic Gap Penalty is a gap penalty method in sequence alignment that belongs to the class of gap penalty models and is distinguished by its adaptive assignment of gap costs based on alignment context, position, or evolutionary considerations, thereby varying penalties dynamically during the alignment process.

10

Publications

543

Citations

24

Authors

21

Institutions

Publications per year

2017–2026

0

Parents

Publications

10

A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given.

Jotun Hein · Molecular Biology and Evolution · 1989 · 182 citations · Full text

, , +17

Protein structure comparison using iterated double dynamic programming

William R. Taylor · Protein Science · 1999 · 138 citations · Full text

, , +12

Variable gap penalty for protein sequence–structure alignment

M. S. Madhusudhan, Marc A. Martı́-Renom, Roberto Sánchez et al. · Protein Engineering Design and Selection · 2006 · 63 citations · Full text

, , +17

Efficient Computation of Gapped Substring Kernels on Large Alphabets

Juho Rousu, John Shawe‐Taylor · 2005 · 36 citations

, , +13

Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility

Atsushi Hijikata, Kei Yura, Tosiyuki Noguti et al. · Proteins Structure Function and Bioinformatics · 2011 · 27 citations · Full text

, , +15

1–5 of 10

Authors

24

  1. MS
    M. S. Madhusudhan

    Indian Institute of Science Education and Research Pune, India

    1 publications · 63 citations

    1

    h-index

  2. SA
    Sonal Aggarwal

    Indian Institute of Technology Hyderabad, India

    1 publications · 20 citations

    1

    h-index

  3. TN
    Tosiyuki Noguti

    Kyushu University, Japan

    1 publications · 27 citations

    1

    h-index

  4. SH
    Shawe-TaylorJohn

    1 publications · 15 citations

    1

    h-index

  5. SL
    S.H. Lee

    The Aerospace Corporation, United States

    1 publications · 18 citations

    1

    h-index

1–5 of 24

Institutions

21

  1. QB3

    San Francisco, United States

    1 h-index

    2 publications

    126 citations

  2. Research Triangle Park Foundation

    Durham, United States

    1 h-index

    1 publications

    182 citations

  3. London Institute for Mathematical Sciences

    London, United Kingdom

    1 h-index

    1 publications

    138 citations

  4. Keck Graduate Institute

    Claremont, United States

    1 h-index

    1 publications

    24 citations

  5. The Aerospace Corporation

    El Segundo, United States

    1 h-index

    1 publications

    18 citations

  6. University of Virginia

    Charlottesville, United States

    1 h-index

    1 publications

    20 citations

  7. Nagoya University

    Nagoya, Japan

    1 h-index

    2 publications

    54 citations

  8. National Institute of Environmental Health Sciences

    Durham, United States

    1 h-index

    1 publications

    182 citations

1–8 of 21

Venues

  1. Journal of Machine Learning Research

    JMLR · 1 publications · 15 citations

    1

    h-index

  2. Protein Science

    PS · 1 publications · 138 citations

    1

    h-index

  3. Molecular Biology and Evolution

    MBE · 1 publications · 182 citations

    1

    h-index

  4. Computers & Structures

    1 publications · 18 citations

    1

    h-index

  5. Protein Engineering Design and Selection

    PEDS · 1 publications · 63 citations

    1

    h-index

1–5