Concepedia

Context-dependent Codon Evolution

Context-Dependent Cod on Evolution is a theoretical framework in molecular evolution that models the substitution rates of codons as a function of their genomic and epistatic contexts, thereby distinguishing itself from traditional codon models by explicitly incorporating dependencies on neighboring nucleotides, structural features, or coevolving sites.

80

Publications

5.5K

Citations

216

Authors

129

Institutions

Publications per year

2017–2026

15

Parents

Publications

80

The extent of codon usage bias in human RNA viruses and its evolutionary origin

Gareth M. Jenkins, Edward C. Holmes · Virus Research · 2003 · 511 citations

, , +16

Codon usage between genomes is constrained by genome-wide mutational processes

Swaine L. Chen, William Lee, Alison K. Hottes et al. · Proceedings of the National Academy of Sciences · 2004 · 377 citations · Full text

, , +16

Evolutionary Basis of Codon Usage and Nucleotide Composition Bias in Vertebrate DNA Viruses

Laura A. Shackelton, Colin R. Parrish, Edward C. Holmes · Journal of Molecular Evolution · 2006 · 340 citations

, , +17

The influence of codon context on genetic code translation

Lionello Bossi, John R. Roth · Nature · 1980 · 288 citations

, , +14

Low-usage codons in Escherichia coli, yeast, fruit fly and primates

Shiping Zhang, Geoffrey Zubay, Emanuel Goldman · Gene · 1991 · 198 citations

, , +14

1–5 of 80

Authors

216

  1. SC
    Supriyo Chakraborty

    Assam University, India

    4 publications · 70 citations

    4

    h-index

  2. ST
    Shiheng Tao

    Northwest A&F University, China

    3 publications · 58 citations

    3

    h-index

  3. TH
    Tarikul Huda Mazumder

    Assam University, India

    3 publications · 62 citations

    3

    h-index

  4. SU
    Siddiq Ur Rahman

    Northwest A&F University, China

    3 publications · 58 citations

    3

    h-index

  5. AU
    Arif Uddin

    Assam University, India

    2 publications · 44 citations

    2

    h-index

1–5 of 216

Institutions

129

  1. Assam University

    Silchar, India

    6 h-index

    13 publications

    234 citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    5 h-index

    9 publications

    426 citations

  3. University of Edinburgh

    Edinburgh, United Kingdom

    4 h-index

    8 publications

    372 citations

  4. Uppsala University

    Uppsala, Sweden

    3 h-index

    3 publications

    246 citations

  5. Université Claude Bernard Lyon 1

    Villeurbanne, France

    3 h-index

    4 publications

    211 citations

  6. Stanford University

    Stanford, United States

    3 h-index

    13 publications

    2.2K citations

  7. University of Utah

    Salt Lake City, United States

    3 h-index

    6 publications

    676 citations

  8. Northwest A&F University

    Yangling, China

    3 h-index

    8 publications

    153 citations

1–8 of 129

Venues

  1. Journal of Molecular Evolution

    12 publications · 742 citations

    12

    h-index

  2. Gene

    7 publications · 619 citations

    7

    h-index

  3. Nucleic Acids Research

    5 publications · 351 citations

    5

    h-index

  4. Genomics

    4 publications · 106 citations

    4

    h-index

  5. Virus Research

    4 publications · 591 citations

    4

    h-index

1–5