Concepedia

Binding Site Visualization

Binding Site Visualization is a molecular visualization technique that specifically renders and highlights the three-dimensional structural regions on a biomolecule where ligands or other interacting molecules bind, thereby enabling the analysis of molecular interactions and functional mechanisms.

52

Publications

4.9K

Citations

201

Authors

85

Institutions

Publications per year

2017–2026

15

Parents

Publications

52

Fast prediction and visualization of protein binding pockets with PASS

G.Patrick Brady, Pieter F. W. Stouten · Journal of Computer-Aided Molecular Design · 2000 · 533 citations

, , +12

PrankWeb: a web server for ligand binding site prediction and visualization

Lukáš Jendele, Radoslav Krivák, Petr Škoda et al. · Nucleic Acids Research · 2019 · 497 citations · Full text

, , +17

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories

Adam Jurčík, David Bednář, Jan Byška et al. · Bioinformatics · 2018 · 405 citations · Full text

, , +17

Visualization of drug-nucleic acid interactions at atomic resolution

Henry M. Sobell, Chun-che Tsai, S.C. Jain et al. · Journal of Molecular Biology · 1977 · 274 citations

, , +14

POVME 3.0: Software for Mapping Binding Pocket Flexibility

Jeffrey Wagner, Jesper Givskov Sørensen, Nathan K. Hensley et al. · Journal of Chemical Theory and Computation · 2017 · 273 citations

, , +17

1–5 of 52

Authors

201

  1. HM
    Henry M. Sobell

    University of Rochester, United States

    6 publications · 994 citations

    6

    h-index

  2. SJ
    S.C. Jain

    University of Rochester, United States

    4 publications · 814 citations

    4

    h-index

  3. CT
    Chun-che Tsai

    University of Rochester, United States

    3 publications · 743 citations

    3

    h-index

  4. MM
    Martin Maňák

    University of West Bohemia in Pilsen, Czechia

    2 publications · 555 citations

    2

    h-index

  5. AP
    Antonín Pavelka

    Masaryk University, Czechia

    2 publications · 555 citations

    2

    h-index

1–5 of 201

Institutions

85

  1. University of Rochester

    Rochester, United States

    6 h-index

    20 publications

    3.3K citations

  2. University of Bergen

    Bergen, Norway

    3 h-index

    9 publications

    581 citations

  3. Masaryk University

    Brno, Czechia

    2 h-index

    25 publications

    6.6K citations

  4. Harvard University

    Cambridge, United States

    2 h-index

    4 publications

    63 citations

  5. Charles University

    Prague, Czechia

    2 h-index

    5 publications

    2.5K citations

  6. University of California San Diego

    San Diego, United States

    2 h-index

    9 publications

    1.9K citations

  7. RECETOX

    Brno, Czechia

    2 h-index

    21 publications

    4.9K citations

  8. University of West Bohemia in Pilsen

    Pilsen, Czechia

    2 h-index

    15 publications

    2.5K citations

1–8 of 85

Venues

  1. Journal of Molecular Biology

    JMB · 7 publications · 1.1K citations

    7

    h-index

  2. Bioinformatics

    6 publications · 746 citations

    6

    h-index

  3. Nucleic Acids Research

    5 publications · 1K citations

    6

    h-index

  4. Journal of Computer-Aided Molecular Design

    3 publications · 652 citations

    3

    h-index

  5. BMC Bioinformatics

    2 publications · 34 citations

    2

    h-index

1–5