Concepedia

Base Pairing Models

Base Pairing Models is a computational or theoretical framework within nucleic acid modeling that specifies the geometric and energetic rules governing the formation of hydrogen-bonded nucleobase pairs, distinguishing it from other structural prediction methods by focusing on the specificity and stability of complementary base interactions.

186

Publications

10.6K

Citations

561

Authors

223

Institutions

Publications per year

2017–2026

21

Parents

Publications

186

A standard reference frame for the description of nucleic acid base-pair geometry

Wilma K. Olson, Manju Bansal, S.K. Burley et al. · Journal of Molecular Biology · 2001 · 602 citations

, , +14

OPLS potential functions for nucleotide bases. Relative association constants of hydrogen-bonded base pairs in chloroform

Julianto Pranata, Scott G. Wierschke, William L. Jorgensen · Journal of the American Chemical Society · 1991 · 596 citations

, , +15

Femtosecond molecular dynamics of tautomerization in model base pairs

Abderrazzak Douhal, S. K. Kim, A. H. Zewail · Nature · 1995 · 493 citations

, , +14

Thermodynamic Analysis of Interacting Nucleic Acid Strands

Robert M. Dirks, Justin S. Bois, Joseph Schaeffer et al. · SIAM Review · 2007 · 371 citations

, , +16

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

Richard Lavery, K. Zakrzewska, David L. Beveridge et al. · Nucleic Acids Research · 2009 · 311 citations · Full text

, , +17

1–5 of 186

Authors

561

  1. BL
    Bernhard Lippert

    TU Dortmund University, Germany

    6 publications · 245 citations

    6

    h-index

  2. PH
    Pavel Hobza

    Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry, Czechia

    4 publications · 582 citations

    4

    h-index

  3. SM
    Stewart McGavin

    University of Dundee, United Kingdom

    4 publications · 207 citations

    4

    h-index

  4. RL
    Richard Lavery

    Institut de Biologie Physico-Chimique, France

    4 publications · 382 citations

    4

    h-index

  5. DH
    Douglas H. Turner

    University of Rochester, United States

    3 publications · 112 citations

    3

    h-index

1–5 of 561

Institutions

223

  1. Centre National de la Recherche Scientifique

    Paris, France

    6 h-index

    36 publications

    6.2K citations

  2. Scripps Research Institute

    San Diego, United States

    5 h-index

    16 publications

    2K citations

  3. Stanford University

    Stanford, United States

    5 h-index

    14 publications

    630 citations

  4. TU Dortmund University

    Dortmund, Germany

    5 h-index

    13 publications

    459 citations

  5. University of Dundee

    Dundee, United Kingdom

    4 h-index

    4 publications

    207 citations

  6. University College London

    London, United Kingdom

    4 h-index

    9 publications

    512 citations

  7. Rutgers, The State University of New Jersey

    New Brunswick, United States

    3 h-index

    25 publications

    6.5K citations

  8. California Institute of Technology

    Pasadena, United States

    3 h-index

    10 publications

    3.5K citations

1–8 of 223

Venues

  1. Nucleic Acids Research

    19 publications · 1K citations

    18

    h-index

  2. Journal of the American Chemical Society

    JACS · 12 publications · 2K citations

    12

    h-index

  3. Journal of Theoretical Biology

    8 publications · 170 citations

    8

    h-index

  4. The Journal of Physical Chemistry B

    6 publications · 259 citations

    6

    h-index

  5. Biochemistry

    6 publications · 294 citations

    6

    h-index

1–5