Concepedia

Automated Binning

Automated Binning is a computational method in metagenomics that belongs to the class of genome recovery techniques and is distinguished by its use of algorithmic approaches to autonomously group metagenomic contigs into taxonomically or genomically coherent clusters without manual intervention.

28

Publications

12.1K

Citations

149

Authors

71

Institutions

Publications per year

2017–2026

15

Parents

Publications

28

Binning metagenomic contigs by coverage and composition

Johannes Alneberg, Brynjar Smári Bjarnason, Ino de Bruijn et al. · Nature Methods · 2014 · 3K citations

, , +12

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

Yu‐Wei Wu, Blake A. Simmons, Steven W. Singer · Bioinformatics · 2015 · 3K citations · Full text

, , +17

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

Christian M. K. Sieber, Alexander J. Probst, Allison Sharrar et al. · Nature Microbiology · 2018 · 1.8K citations · Full text

, , +17

Automated binning of microsatellite alleles: problems and solutions

William Amos, Joseph I. Hoffman, A J Frodsham et al. · Molecular Ecology Notes · 2006 · 1.5K citations

, , +13

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

Yu‐Wei Wu, Yung-Hsu Tang, Susannah G. Tringe et al. · Microbiome · 2014 · 756 citations · Full text

, , +17

1–5 of 28

Authors

149

  1. AJ
    Alexander J. Probst

    University of Duisburg-Essen, Germany

    4 publications · 2K citations

    4

    h-index

  2. SG
    Susannah G. Tringe

    Joint Genome Institute, United States

    3 publications · 2.7K citations

    3

    h-index

  3. SP
    Sarah P. Esser

    University of Duisburg-Essen, Germany

    2 publications · 54 citations

    2

    h-index

  4. TL
    Tom L. Stach

    University of Duisburg-Essen, Germany

    2 publications · 54 citations

    2

    h-index

  5. PG
    Paul G. Dennis

    The University of Queensland, Australia

    2 publications · 350 citations

    2

    h-index

1–5 of 149

Institutions

71

  1. Joint Genome Institute

    Berkeley, United States

    3 h-index

    5 publications

    4.7K citations

  2. The University of Queensland

    Brisbane, Australia

    2 h-index

    12 publications

    2.1K citations

  3. University of California, Davis

    Davis, United States

    2 h-index

    2 publications

    2K citations

  4. University of California, Berkeley

    Berkeley, United States

    2 h-index

    10 publications

    9.9K citations

  5. Lawrence Berkeley National Laboratory

    Berkeley, United States

    2 h-index

    6 publications

    11.1K citations

  6. Fudan University

    Shanghai, China

    2 h-index

    5 publications

    323 citations

  7. University of Duisburg-Essen

    Essen, Germany

    2 h-index

    8 publications

    216 citations

  8. Joint BioEnergy Institute

    Emeryville, United States

    2 h-index

    7 publications

    11.9K citations

1–8 of 71

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 234 citations

    4

    h-index

  2. Bioinformatics

    3 publications · 3.5K citations

    3

    h-index

  3. BMC Bioinformatics

    3 publications · 148 citations

    3

    h-index

  4. Nucleic Acids Research

    2 publications · 117 citations

    2

    h-index

  5. The Journal of Physical Chemistry A

    1 publications · 65 citations

    1

    h-index

1–5